1. Home
  2. Mutant Lines
  3. 52-0306-1

52-0306-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24461203 [Map]; Strand: c
      • AT5G60800.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon5 (CDS)
      • AT5G60800.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 52-0306-1 - 5-prime edge 
    AAAGGCGGTG GTGAGGGAGT GAATATGATG GAGTACATGG CGGCTCAGCC 
    AGCTTACGGG TATGGGTATT ACCCGGGTGG GCCTTATGGA TATCCGATTC 
    AGGCCCACGC GCCGCAGATT TTTAGCGATG AGAATCCGAA TGCTTGTGTT 
    GTTATGTGAA GCGGCGGCGG AGAAATTGGA ATGTGGTAGA GATGTAAATA 
    AGCCATAATC TTTGGGGTGT TTTCGTATTT TTCGTCTCTG CTTCTCCTCT 
    A

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24385443 [Map]; Strand: w
      • AT5G60680.1 - [+] show detail - Protein of unknown function, DUF584
        Distance: -702; Region: promoter
    Flanking Genome Sequence: 52-0306-1 - 3-prime edge 
    TCATGGCTCG TTATTTTTAG CCGTTCCACA CTCTATTTTT TTTATGTCTT 
    TAGTCATCTT TCCTTACCCA ATGAAAACAC TCTGCACAAA GCT

AT5G60680.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF584
Computational Description
Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT3G45210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60800.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60800.2

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1).
Link
InterPro Scan - TAIR