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52-0314-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30055924 [Map]; Strand: c
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon4 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 52-0314-1 - 5-prime edge 
    GTNATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CAGGGCACCG GCTGCTCAAG CAAAACCCAA 
    TATTTATTTA GATGAATGGA ATCCATGCAA GTAAATTAAA CAAGTTTAGG 
    GTTAGTTTTT ACATGGATTT CTGTAATAGA GAGACATTGG ATGCAACACA 
    GTTGCAGAAT TGCTCCAAAA ACTCATAACA AGCCAGCCTC CTTTTCTCCT 
    CTATAAGCCC TTCTGCCTGT CACACAAACA CATGCCATCA GAACCATCTC 
    TCTATGTACT TACTCATGTG ACTTATAACT TAAAACAGGG GCCAAGAATT 
    TCTTAAGCAA CAATTCACTC TGTTATAACC AGCTGGTGAC AGCATCAGAA 
    TGAAATATAT CTATTTCTTT TTTTTTGCAT TGCTTCCATC TATACCCAAA 
    ATAGAACCAA TTAACAAAGA TTTACCGAAA CCATCGTACG TTGACCCTCT 
    TTCAGAAAAG AAAAACAAAA GAAAAAATAA TCATTCTGAT GGAAATGTAA 
    TTGCTTTCAC GTTCGGAAAA CCAATAAGAT CCCGTGATTC ATTAAGTCGA 
    TAGAGGACAT GAATAACGTG TCTATAACTC CAAACAAACA AAAAAGACGC 
    AATAGAGGCT GCCATATGCA TGTAATAAAT GGGGGTAAAA GAAAATGATA 
    TTACCCTGCC ATATGCATTG TAATCGAGGC TGTTCTTGAN AAGATCGACA 
    ATGTCGTTCT TGANATATTT GCAAACCGAG TTTTTCTTNC TCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30055928 [Map]; Strand: c
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon4 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 52-0314-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    ATGAGTGCCG CGAGGCCATC TCCTCCCTTG TATATGCAGC CGCTAGAGTC 
    TCTGAAGTCC CTGAGCTACG CGACCTCAGA TCTTTATTTG CTGAGAGATA 
    CGGAAACACA CTTGATCAGT TTGTGAACCC TGAGGTATTT ATTCTTTGTT 
    GACTATATTT TTTTATATGC TCTGCCACTT GGTCGCTGAC TCCACGGAGG 
    AATGTTGCAG TTTGTAGAGA GATTCAAAGC AGAGCCGCCG TCAAAGGAAA 
    TGAAAGTGGA GCTGCTGCAG GAAATCGCCA GAGAGTACTC CATAAAATGG 
    GATGCCAAGT CTTTAGAGCA GAGATTGTAC ACACCACCTC ATCATCATCA 
    TGTCCATGTG AGTCGTCTTC TTTGTCTGCT TTAAATACAT CATTCCATTT 
    GATTTGAGCC AGACTCTCTC ATTCATAAGC AGACGGAAAC TGAAGAACCA 
    AAAACAGAGA AGACCAACGA CGAACCCGAA AAGACCATGG AAAAGAGAAG 
    CAGCCTTTCG TTCCATGGCA GAGAAGACTC GATGGATGAC AGCAACAAGT 
    CCATAATGAG TACAAGCGAA GAAGACTCCA TGAGTACAAG CGGGAGTTGT 
    ATGACTGGCC CGGAGGATGA TCCTGAAATG AAACCTTTCT ACTACAGATT 
    CATGACTCCT GCGCCTTACA CCAAACCCAA GATCGAAAAA CAGGAAAGTC 
    TTCCGGAGAA GATGACTACA TCTCATCTCA TGGACACCGG G

AT1G79910.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.2

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G52315.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR