1. Home
  2. Mutant Lines
  3. 52-0314-2

52-0314-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30055854 [Map]; Strand: c
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-0314-2 - 5-prime edge 
    CAGGGCACCG GCTGCTCAAG CAAAACCCAA TATTTATTTA GATGAATGGA 
    ATCCATGCAA GTAAATTAAA CAAGTTTAGG GTTAGTTTTT ACATGGATTT 
    CTGTAATAGA NAGACATTGG ATGCAACACA GTTGCAGAAT TGCTCCAAAA 
    ACTCATAACA ANCCAGCCTC CTTTTCTCCT CTATAAGCCC TTCTGCCTGT 
    CACACAAACA CATGCCATCA GAACCATCTC TCTCTGCTTC TCCTCTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30055929 [Map]; Strand: c
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon4 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 52-0314-2 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCGA 
    TGAGTGCCGC GAGGCCATCT CCTCCCTTGT ATATGCAGCC GCTAGAGTCT 
    CTGAAGTCCC TGAGCTACGC GACCTCAGAT C

AT1G79910.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.2

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G52315.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR