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Mutant Lines
52-0342-1

52-0342-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19670005 [Map]; Strand: w
  - AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -241; Region: promoter
  - AT2G48100.1 - [+] show detail - Exonuclease family protein
    Distance: -496; Region: promoter
  - AT2G48100.4 - [+] show detail - Exonuclease family protein
    Distance: -496; Region: promoter
  - AT2G48100.3 - [+] show detail - Exonuclease family protein
    Distance: -550; Region: promoter
  - AT2G48100.2 - [+] show detail - Exonuclease family protein
    Distance: -680; Region: promoter
Flanking Genome Sequence: 52-0342-1 - 5-prime edge
```
GATGTTAGAA AGGGATCGGA TTCTGATTCC ACTATGTTTT CTTTCTTTCT 
TTCTTCTTCG TTGTTTTTGT TTTGGATTGT TACGTTCCTG TCAGGATTTG 
AGAATCATGC ATCAGCNTGT CACTCCTCTC AGGAGGGGGA GATTATATCT 
ACTTGTAACA TACTAATCTT CCAATAAATA AGCACTTCAC ATATTATTAA 
AATACAGTAG ATTCTCATAA TTAGGCCATT TTCCATAAGC TACCAANCNG 
NGNNGATNTN GAANGAGGTC NNTTCAGAAG CTTTTATGGT GTGGCCAAAG 
TTCATATGAG TCTTTGGCTN TGTATCTTCT AAGAGGGAAA CACTACTTAG 
GCTTTTAAGA TCGGGTTGCG GTTTAAGTTC TTATACTCAA TCATACACAT 
GACATCAAGT CATATTCGAC TCCAAAACAC TAACCAAGCT
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19669890 [Map]; Strand: w
  - AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -126; Region: promoter
  - AT2G48100.1 - [+] show detail - Exonuclease family protein
    Distance: -611; Region: promoter
  - AT2G48100.4 - [+] show detail - Exonuclease family protein
    Distance: -611; Region: promoter
  - AT2G48100.3 - [+] show detail - Exonuclease family protein
    Distance: -665; Region: promoter
  - AT2G48100.2 - [+] show detail - Exonuclease family protein
    Distance: -795; Region: promoter
Flanking Genome Sequence: 52-0342-1 - 3-prime edge
```
AGTAACATCA CTCTTCCTTT TTTGAAAAAC TTGTAAAAGT TTCCAACTTT 
CCTCTTTTCA ACAAGTTGTA ATTTCTTCGC TTGTTGCATG TTGAAACACG 
TTATTCTGCA ATTAACAAAG ATAAAATCAC ATAGATTTTG CATTATAAAA 
AGCTCGTTAA TGTCACTATC TTCT
```

AT2G48090.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.1

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.2

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.3

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.4

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR