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52-0360-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22239806 [Map]; Strand: w
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 3275; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 349; Region: intergenic
    Flanking Genome Sequence: 52-0360-2 - 5-prime edge 
    GTGTAATGNA TTTCCTTTAG CTGATNTATA GAAGAACTGA TNACTTCCGT 
    NNGAACCGNT AAACTATNGA TCCCACCGTT GAATCTTTAG CTGANAGNCC 
    CACGAAGATT TNGTCCGGAA NTTTAGNCAA NATGCAGATA TTGCCTGAGG 
    CNTNTACCGT NTNANGAAGC GNGCTGTGAC TTGAGGCGAA TATNCGGCNA 
    ANNTGNGTNN NNACCGANNC CTATAGACGN ATNGGNNNAG GGAACNCGAC 
    CNGTACGTGN NNGGCNNNAN ANACGGNNNG AGNNNGGNNT TNATACCCCG 
    NCGNANCNTG NNANCNNNNC CANNNCNNAN NGNATTGACC GNGNGAANCA 
    AANNNGNNGN NNCGCGGNNC NCGNGGCNAC GAGCNNNNNN GAANACNANN 
    GCNCNGGATG ANNCGCAACA CANNAANGGC GNNGANGCNA NNGNCAANNG 
    CNNAGCGCGG NANNAGGGGT GNNNNNNGNN GAGGNGGNGC ANCGANNCGN 
    GNCATANNGA GAAGATNGGC AGNNAGNNGG GGNGGCNGAG CCNCGNNGGN 
    GNAGAAGNGG NNGNGAATNC GNNNTAAGNG NTNNGGGNGG NNNNGGCGNN 
    NGGNGTNCNG AANGTACGAC NNNNNNAAAG GNANCNAGGG ANCCCNNCTN 
    GGNNNNNGGG GNCGGNAGGG CGNNNNNGGT ANAGCNANGA NNGGGNGGGG 
    AGANNNTNGG ANTTCNNNNN GGCATNGGGN GGGGGNATGN GANCGCGGAN 
    CNGNGNAGNG ATAATAANCN TNCGNCGAAN GGGAGGACGT CGCGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22239684 [Map]; Strand: w
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 3153; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 471; Region: intergenic
    Flanking Genome Sequence: 52-0360-2 - 3-prime edge 
    GCCAACAAGT GACAATGGAT CATCACTAGC AATCGCTCAA GGTTTCCACT 
    CATTCATCTA TGATNCTNCN CTAGNNNCTG TGACNANGAC CGCCCTCATA 
    AAAGATAAGT TCAATTACTT TCTTACATAT TAATTAAGCT TGATTGACAT 
    TCTCACTTAT ATCACAAGCA TTCATCCTTG NTTNTNTNTT TCTACGCAAA 
    GATGAGATCT CCTCTAACGA ACAACATCTT AAATGTNGAT TTTCATACAA 
    CGACGTTTAC AATCTCAGAG ATTCAGATCG TCCATGCCGT AGATATCATC 
    ATCTCTATGT CCAAACCAAT AAG

AT3G60170.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT3G60176.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR