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52-0376-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14149995 [Map]; Strand: c
      • AT4G28660.2 - [+] show detail - photosystem II reaction center PSB28 protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G28660.1 - [+] show detail - photosystem II reaction center PSB28 protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0376-1 - 5-prime edge 
    CTNGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCAA TAGAGTGCAC GAGGAGTTAG AGACACAGAG 
    AGTAAGAAGG AGATGAAGCA AAAAGCTGTG GTGTGGTGGC GGGAGAATCG 
    TGACGTGTCA CTACCAAAGC CGTTCCTTCA TTTGGATACC GTCATCGTCT 
    CAACTTATGG GCTTTTACCT TTAGGCCCGA GATGTTTATA ATAAGCCCAT 
    TTTGGTCAAA TTGTCATATA ATAAACCCAT TTTGGCTTTA GACAGAGTCA 
    GAGAGTCTCT TGCTGTCTCA GAGGTTTTTA AGATGCATGA AACACACGTG 
    GCACATGCGT GTAGATCGTA AGGAAAAGCT GGACTCTCAA GTCTGTGATG 
    CCATAGCGAA TCCCATGGCC TGATCCCTGA TGGCCATGTG ACGAATCGTC 
    AGCATACATA CTTACTTGTT AATATATTAA TTAGTATGGT ATTAATAATA 
    TAACCCAACA AAACACCATT TGCAAAGAGT TTAGGTACTT ATTTGTGGGA 
    TTAGGTTTCT CTCTCTGATA ATACAGAAAT TAATACTAAA TTAAGTCACT 
    ATAGGTGCTG ATCCACATGC ATNCCATTAA GCCTTCAAAC CTCTTGTAAG 
    TGTTTATNTC TTTATGATCT ATAGTCTATA AAATCTCCTA TAAACCATNC 
    ATTGTTCTTT TGGGTAATAA TTGGATTATT ATAATANTTA TGGNGTAGAT 
    CAAAATTTAT TTATTTTCCT AANATATTGT ATATATCAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14032605 [Map]; Strand: c
      • AT4G28362.1 - [+] show detail - pre-tRNA
        Distance: 44; Region: intergenic
      • AT4G28365.1 - [+] show detail - early nodulin-like protein 3
        Distance: 240; Region: intergenic
    Flanking Genome Sequence: 52-0376-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AGATATATAT GGTGTACCGG TTTAATATAT TGATTAAAGT TAAATTGTTC 
    AAACCATTCT TATATGTACA AAAAGTGTAT AAGATC

AT4G28362.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: TTT)
Link
InterPro Scan - TAIR

AT4G28365.1

Model type
Protein coding
Short Description
early nodulin-like protein 3
Computational Description
early nodulin-like protein 3 (ENODL3); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 4 (TAIR:AT4G32490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28660.1

Model type
Protein coding
Short Description
photosystem II reaction center PSB28 protein
Curator Summary
Similar to PsbW subunit of photosystem II.
Computational Description
photosystem II reaction center PSB28 protein (PSB28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, photosystem II reaction center, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein Psb28, class 1 (InterPro:IPR005610); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28660.2

Model type
Protein coding
Short Description
photosystem II reaction center PSB28 protein
Curator Summary
Similar to PsbW subunit of photosystem II.
Computational Description
photosystem II reaction center PSB28 protein (PSB28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane, photosystem II reaction center; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein Psb28, class 1 (InterPro:IPR005610).
Link
InterPro Scan - TAIR