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52-0404-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19372003 [Map]; Strand: w
      • AT2G47180.1 - [+] show detail - galactinol synthase 1
        Distance: -1562; Region: intergenic
      • AT2G47190.1 - [+] show detail - myb domain protein 2
        Distance: -4199; Region: intergenic
    Flanking Genome Sequence: 52-0404-1 - 5-prime edge 
    CTGCTGAATC CTGATGTTGA CATTGACTCT AAACGTGTTT TGTGTTGCAA 
    ATTTTGACAA AGAAAAGAGA TTAATAATGA GAAAGTGGGA CTCTTACCAT 
    ATGTCTTCGA ATTTCCTGCC AAAAGCGTCG GTTGTGTTGA GCTTTGACTT 
    TTATTACCTT AATCATCGCC GGTCATTTTT GATTTTGGCT CCTTAATATT 
    ATTCATATGT TTCCATTATT GTACATGTAT ATAATTTACT TTCTAGCTTA 
    TTTTTTCTTC ACGCAGCTTT GACATTGTTG CTTTTCGGAG ATCATATATT 
    CCGACCAATC AAAATCTACC ACATAGTGTC CGAGTTTAGG CAACATGCAT 
    TACATTTACT TCCAGAATTA AAATTTCATT TTTTTTACGG TTTATGGTAG 
    ACTTTTACTA AAGTTTTCAT ATTGTCAACT GTAAGACTTC TTAAAAATCC 
    TTTTATGTTT CTCTTTTCTT AGAGCATTTT CTAACTTATT TTACACACAT 
    CCTTCTCATG GCATAAAAAT AACTATTTTG TTTTCTCAAC TACTTTTCCA 
    GTTTACATAT TTATTTCTTG CAAGATAAAA TAGTTGTGTC AAAAATGTTA 
    AAATACAATT AAATGATTTG ACCCTTTAGT TAGAAACTTA TTATTATATT 
    CTATGCATAA ATTTAAAAGG CTGAAAATGC ATTCCTTTCA TTTTTTATAC 
    ACCAAAATGG ATACCACGTA G

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19371938 [Map]; Strand: w
      • AT2G47180.1 - [+] show detail - galactinol synthase 1
        Distance: -1497; Region: intergenic
      • AT2G47190.1 - [+] show detail - myb domain protein 2
        Distance: -4264; Region: intergenic
    Flanking Genome Sequence: 52-0404-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCGT 
    GTTCAGCAGT ATGGTATACG GTTTGAAGAG AAGCGAGAGG TAAGTGTCTG 
    TGTAGCAAAT GCTTGAATCT GCTTCTTGGC ATCTACAAAC TACAAAGTAT 
    CAAAAACATA TGAATAATCA TATAATAAAA TATTAATTGC ACCATGCCAT 
    CATTGGCTTG AGACTCAAGC CTTGAGTGTT AGAATCATAA ATAGTTTTGT 
    TACCTTTTTG GCATTTGGTG AAATCCAACG GTGTTTGCAA ACACTAAGAG 
    TCAAGCAAAC TCCAATAACA AAAACATAAT GATCCAAGCA GCTTGCTGTA 
    GAAATAGTTA CATAAAAGTT CATACAAAAG TTTCATACTA TGGTGACAAA 
    TGAAACCTAT AGAGACTTAG GCTTTATTGG GCCCAATGTT TGTGAGCTAC 
    GAGCCCAAAT CAAGTGAAAG ATAATGAAAC TACAAAAAAT GTAATTAAAT 
    AAAGCTCTTT GTAGATTTAG CTGGACAAAT TTTTTAAAAA ATCAATGAAA 
    GTTAAAAAGG ACTTGTGGAA AATGTGACGC GAGACATTTC TACCGACATC 
    TGAGAAGAAG TGACTGTATA TCCAATAAGG AAAGAGAAAG GAATTGGATC 
    TTCGATGGAG CCCACGAGTG TTCACTACGC ACCATGGAAT TGGTTCATAT 
    GGCCCATTAA GAGATTAATG GGCCCAAATC AGATGGCGCG TGTATCTCAC 
    GGTGATTCTT CACCCAGGTA AATTGCTAAT GCGGTGT

AT2G47180.1

Model type
Protein coding
Short Description
galactinol synthase 1
Computational Description
galactinol synthase 1 (GolS1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: response to high light intensity, carbohydrate biosynthetic process, response to hydrogen peroxide, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galactinol synthase 2 (TAIR:AT1G56600.1); Has 1198 Blast hits to 1197 proteins in 285 species: Archae - 0; Bacteria - 104; Metazoa - 258; Fungi - 278; Plants - 420; Viruses - 71; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47190.1

Model type
Protein coding
Short Description
myb domain protein 2
Curator Summary
Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.
Computational Description
myb domain protein 2 (MYB2); FUNCTIONS IN: calmodulin binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 112 (TAIR:AT1G48000.1); Has 8762 Blast hits to 8122 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 719; Fungi - 467; Plants - 5817; Viruses - 4; Other Eukaryotes - 1755 (source: NCBI BLink).
Link
InterPro Scan - TAIR