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52-0409-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 254566 [Map]; Strand: w
      • AT5G01680.1 - [+] show detail - cation/H+ exchanger 26
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-0409-1 - 5-prime edge 
    CTCACGGTCG TCTGCTCCAC CGAGGAATAT TGAACAGATG TTGATTCTCA 
    TTGAGCCGTT CTTCATCGCC GTTCCCATGT TCTTGAAATC TGGAAGCCGT 
    CCTTGGTCCA TTAGAACCGC AACNGGAGCT AGGTGAGGCA TTCCGGACGT 
    TGCGACAGAG CCTTCGTTCT GCTGCAGTCC CGTCGGCCAT CCCGACAATG 
    ATGAGATCGG TTTCTTTTTC GAAGGCCAAG GCACATACAT CCTCGTGCAT 
    CGTCTTGCTC GGTGCAACTG CTGTGAAACA TTCAACGGAA ACGTTTTCTT 
    GCAAATCGTG GCCGCTTCGG AATTTCTCGA AGGCTTTGGA GATCTGATCT 
    CTGCGGCTGG AAGACGTTGA TGACTCGTCG TTGTGACCTG GATGGTGTTG 
    AATGAGGAGA GGGACGTTAT TTTGCTCAAG CTCTTCAAGA TTAACGGAAA 
    CGATGGAGAG CGAAGAGGCG CTCGAGGGAC AAGTAGAGAG CTCCAAGACG 
    GTGAGGATGG GAGGAACGGT TTCACGGTGG TAGAAACAAG TGAGGATCTT 
    GAGAGGTTTG TTTGGTTCGT AGTGTTGAAC GGTTTGTCGC CGGTAAGTGA 
    TGTGTTTCCT CTGCACCCAC CCGTAGAGAT TTTTGACAAT GGCCGTGAAA 
    ATGGTCGAGT GAACCATGGC AGAGATCACC ATTATNCCAA ATGCCTCGTG 
    GCTTATATTC TGCATNCCTT AAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 241937 [Map]; Strand: w
      • AT5G01640.1 - [+] show detail - prenylated RAB acceptor 1.B5
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0409-1 - 3-prime edge 
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCA 
    GAGCTCCTCG ATCGATCCGC TTTCACAAAG CCTGACTCTC TCTCCGAGGC 
    CGGGACGCGA TTCCGGAAAA ATTCCTCTTA TTTCAGGGTG AATTACGTTT 
    GCATTGTCGC TCTGATCCTT GGTTTCTCTC TTCTCGCCCA CCCATTCTCT 
    CTCATCCTCC TCCTATGTCT CGCCGCTTCC TGGCTCTTCC TCTACCTCTT 
    CCGTCCATCA GATCGTCCTC TTATCCTCTT CGGCCGATCT TTCTCCGAAT 
    ACGAAACTCT CGGTGGCCTA ATCCTCTCCA CGATCGCAGT GATCTTCTTC 
    ACAAGCGTCG GATCTGTATT GATATCCGCT CTCATGATCG GAATAGCAAC 
    AATCTGTGTC CATGGCGCCT TTAGAGCTCC CGATGATCTC TTCCTCGACG 
    AACAAGATCA TGCCGCCTCC GGATTCCTCT CATTCATCGG TGTTCCCGCG 
    ATCCCCTCTG TAGCACCCTC TGCCTCCTCA GCGGCTTCCC CCGTGTAAAT 
    TACCGTTCTC AGAATCTGGC GTGTTTAGAG ATTTGAAGGT GGAGATTGTT 
    GCAATGTAAT TTTCTGTGAT ACTTGACCAT TGTTGCAATG TAATTTTCAT 
    TGAAGTCAGT CACCAATCAC ATTGAACAGA TGTTTTAAAA TGTCCACGTA 
    AGCAATTATT GTTTGGAACG ATTTCGGGTT AGCATTCGTG CCGNTAGTTA 
    CCGCAATAAA AGGCCGNGGC AATATCACAC TTGTCTTGGA ACG

AT5G01640.1

Model type
Protein coding
Short Description
prenylated RAB acceptor 1.B5
Computational Description
prenylated RAB acceptor 1.B5 (PRA1.B5); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B4 (TAIR:AT2G38360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01680.1

Model type
Protein coding
Short Description
cation/H+ exchanger 26
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
cation/H+ exchanger 26 (CHX26); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, leaf, pollen tube; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 27 (TAIR:AT5G01690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR