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52-0415-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2125888 [Map]; Strand: w
      • AT3G06730.1 - [+] show detail - Thioredoxin z
        Distance: 0; Region: exon4 (3UTR)
      • AT3G06740.1 - [+] show detail - GATA transcription factor 15
        Distance: -526; Region: promoter
    Flanking Genome Sequence: 52-0415-1 - 5-prime edge
    TGCACGATAT CATTGACAAC GAGATGTGAA GTTTTTACTG AGGAAACACT 
    TTCGTGCTCT ATGATTTGAA AAGAATCGTC GTAATTTAGG ACTGGTACCG
    AGTTGTTTGC ATTTGAGATG TGGTAAGAAT GTCATCTAGG TTTCATAGTT
    GAAGAATGTA GTCTTAAGAC ATTTGTTTGT ATGCACNTGT TAGTTTCCAT
    ACCTAAGTGA AAAGGTTAGA GCTGTTGATC TGGTCAGATC CAAGTTATGA
    GGCACAACTA AATCTCGGTC CGGTCCATGT AATACTGTAG CTTAAACTTG
    AATGAGAGAG ATATGACGTC TTTAAAGACT TTTTTTCCAT TTCATGATTG
    ACATTAAACC GGAACTAAAG TATTATTAAA CACCATTATT AGAAAAAGCA
    CGACGCCAAT CGAAATGGCG CCCAAATTAT GCGAAAATTT TCCTACAGGG
    TTATGTGCGA TATTTGGCGG GTGGCTCTAG CCTGATATTA GAGGACGTAA
    ACAGGGGTAA TTTCGTCTTT TAAAACAATA AATTAAAGCT AGGGTTTAGC
    CGAACCAATT CCATTTATAA TTGGCCATTT GGTTTAGTTT TTGTGCGGTA
    TCTGTTANGT CGTTTCTTTG AAATCAAAAA AAAAAATNTT TGTTTNTTTG
    ACCCTCTNTT TNTCTNTGTN CCTACTTTNA ANATTNAAAT TTTTGTTTCC
    CTGATCCCTC CTTT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2125772 [Map]; Strand: w
      • AT3G06730.1 - [+] show detail - Thioredoxin z
        Distance: 0; Region: exon4 (CDS)
      • AT3G06740.1 - [+] show detail - GATA transcription factor 15
        Distance: -642; Region: promoter
    Flanking Genome Sequence: 52-0415-1 - 3-prime edge
    ATCGTGCATC ATCTGTAACG GAATTAGCCC TTCTGTCCTG ATTGCATCTT 
    TGCTTGGGTC AGGACTGATG AAGAATAATG TAGGTAACCC TCGAACCTGT
    ATCACAAGAG TTGGTTAATG TAAGAATTTA CATTGATATG CTTGAGAGGA
    GATTCATGAA ATTTAAAAAC ATAAGCTGCA AGTTACAGTA TACCTGCATG
    TCGCGTGCAA ACTCGTACTC ATCATCTGTA TCAACTTTCA CGATTATTGC
    ATTGCTCTCA TACTCTACTG CAAGCTGTTT CACAATGAGC AAAAACTATT
    TAACACGAGT ATCATGAGAT TTGCAGAGTG AAAAAGCAAG TAGATAAAGC
    CAATCAATAA GAAGATGCTT AGATTCTCCT ATCTCACACA TTTCTTTTGA
    ATTTGTAGAC ACGCCAACTA CGCGACAAGG TATCTTTGTC ATAAAGTATG
    GGAGAAACAG TCGTAAGATT GGAACTGTTT AACTCCTTTA TCTAATTCAC
    CAAAAGAACT AAACCATAGA AGAGACTTGA TTAATGAGAG CGGTCTTTCA
    ACTCTAGTCA ATTGCCAAAC CAAGACCCAA GACAAATCCA GAGTGCCCCC
    AATACATTTT CATAGCCCCT CTTTAAACAT TAAGATC

AT3G06730.1

Model type
Protein coding
Short Description
Thioredoxin z
Curator Summary
Encodes a plastidial thioredoxin (TRX) isoform that defines a branch of plastidial TRXs lying between x- and y-type TRXs and thus was named TRX z. Possesses disulfide reductase activity in vitro. TRX z was previously named as Trx p (thioredoxin putative and plastidic) before its thioredoxin activity was confirmed (Meng et al., PNAS 2010, 107:3900). Knockout mutant of TRX z has a severe albino phenotype and is inhibited in chloroplast development. Two fructokinase-like proteins (FLN1 and FLN2), members of the pfkB-carbohydrate kinase family, are potential TRX z targets.
Computational Description
Thioredoxin z (TRX z); FUNCTIONS IN: protein-disulfide reductase activity, protein disulfide oxidoreductase activity; INVOLVED IN: plastid organization, cell redox homeostasis; LOCATED IN: thylakoid, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y2 (TAIR:AT1G43560.1); Has 15064 Blast hits to 14650 proteins in 2900 species: Archae - 204; Bacteria - 8491; Metazoa - 1613; Fungi - 754; Plants - 1355; Viruses - 0; Other Eukaryotes - 2647 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06740.1

Model type
Protein coding
Short Description
GATA transcription factor 15
Curator Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description
GATA transcription factor 15 (GATA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 16 (TAIR:AT5G49300.1); Has 1479 Blast hits to 1431 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 586; Plants - 738; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR