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52-0420-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8126467 [Map]; Strand: c
      • AT5G24040.2 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 0; Region: intron2 (CDS)
      • AT5G24040.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0420-2 - 5-prime edge 
    GGGTAAGGAG ACGACCAACA TTTTTATATC TTGTATTTCA TGCAACTTGG 
    AACAAAACTA AAATTTACAA GTCTTTTTAT TTCATTCGTT ATCTCCAACA 
    GCTTTTAATG ACAGGGGACA AACTCATTCT CGTAGAGATG TGCACAAAGA 
    GCCGATACGA TTTTCACATA CCAAATATCC GTGAGAAAAA GATATGGTTC 
    GAAATATCAG AGTTAAACGA GGGAAGAAAC GATTGGGATC AAGTGGAAGA 
    TATGGACGGT CGTGTGTTGT TCTTGGAGCA TTATTGTACT TTCTCATGCT 
    TGGCTACTGA AATTCCAGGG TTTAGGGCTA ACTCTATAAT CTTCATGGAC 
    TTGTGGGGAG GATCTAACTC ATATGAACTT GAAAGCATTC TCGTGTATGA 
    ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8126583 [Map]; Strand: c
      • AT5G24040.2 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 0; Region: exon2 (CDS)
      • AT5G24040.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0420-2 - 3-prime edge 
    CCTTACCCAA CGTTTCCTTG TCTTATCACA AGGTCTTGAC CGCTGAAATG 
    TATTCACTTC TAGTGTTGGA TCTACCACTG TTGTTTTTCC GGTGCGATCT 
    ATCGCGTAAA ACTTGCCTTT AAATGGAACT ATCCCTTCAA AAAATGAATC 
    GGGTGTTATC TCGAGCTCAG TCCAACGGTT ATCGACTGAC CTATACATTG 
    CGAGACCATT GAATGAGAGC TTCCCTAGAA TCATATATTC GTTTTTCTCT 
    CTGTTTAGAC CCATAAATCC GATACGTTCT TCACATTTTG AAATGCATTC 
    AAATAATTCA AACCATTCGC TGTAACAAGC CACATGTTCT TGCGCTAGCT 
    CAAAGATTTG ACAATTGAGC AAATCAATAG ATAGACTTGG ATACAAGCAT 
    CCATACGCAG AGGAGTTTCT TCTTAAGAAC AAACTATGTA GAACAACTTC 
    TCCATTCTCT TTAGCTTGTA GTTTAAACAT CCTGGCAGGA GAAAATTATC 
    ATCTATGTAT CATCAAGATT CAAGAATCAA TACAAGAAAC AGATTTTATT 
    ACCAATATTG GGGACGGTCA CGATTAGGAC ACTTGAGAAG GTAGACACGG 
    CTGCTCAAGA TATGGCAATC ATCACCACAA CCGCCGGGAT CAAGGGGAAG 
    AGGACATCTA AGTGATGTCA TGTGTCTGAA TTTGAGGAGA CTAGAGGATC 
    GCCAAAAGGA ACAAACTGAC CGAAGTGGAT CA

AT5G24040.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G16290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24040.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G16290.1).
Link
InterPro Scan - TAIR