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Mutant Lines
52-0506-1

52-0506-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 2886770 [Map]; Strand: w
- AT5G09300.1 - [+] show detail - Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT5G09300.2 - [+] show detail - Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
  Distance: -297; Region: promoter

CCGAGTCACG TGGCTCCTAG AACCGAAACC GAGGTTGTGT CTGAGAATAT 
TGAGTAAAGT CGATTTTGAT GAAAAAGAAG ATCTCAAATG CAGAGCCATT 
TTTGATTTTA GAATTTGATA GAGAATGGAT AGAGAGAGAT TGTTGAAAAC 
TGAAACGTGA AAAGTGTAGT TGTTAAGTGC CGTACAGATT TTGATTCCTT 
AATCATAAAG TGGAATCTTT TATTAAGGAA TCGCGAACAA GGCCTTCGTC 
TGTAAAAATA TAAGCCCACA ACACTATTAA ATGGCCCACT ATATAAAACG 
GCTTCATCAG GACCCAAACT TTTATTTGGT TACAAGATAC TCTCACTTTA 
ACACGAGGTC ACACACACAA GATATGCCTA AAATGAATGA CTTTAAAGTC 
ACATCCATAT CTTCACAGTT CCAACTTTGC CAAAATCCAA CATTTAGAAA 
CAGAGCACCA TTTTGGCTGA TATAACAAGA GAAATTAAAC AACTCTTGAT 
AACTAATTAC TTCATTGATT GATGAATGAT CCAAGCAGTT TAATATTCAC 
AGCAGTATCT CCTCAACTTT TTGTTAAAAC AACTTATGAT TGCATAGAAA 
CACATGAGAA CGGAATTGGC AAAAGTCAAG GCCATGAGAT CTTNCTGTTT 
CTACTATGTC AAAGATAAAC GAGATAGAGA GAGAGAGAGA CANGGCGGNG 
GGAGCTAAGC CAAACCAGAC AAGCCG

3 prime edge [+] show sequence

Chromosome: 5; Position: 2886651 [Map]; Strand: w
- AT5G09300.1 - [+] show detail - Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT5G09300.2 - [+] show detail - Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
  Distance: -178; Region: promoter

CTCGGCATAT CCGCCAAATC CTACCACATG ACCCCCCGCT TCGAGGTTCA 
CAGAATCCAA TTAGCCGTCT CTGTAATACC ATGGCGGAGC CAGAGACACT 
CTCTAGTTTT GTTCAGCACG AATACGCCAA CAATCATCAG GTGCATGCAT 
TGTTCCTCCG CATTTTGACT TTTATAGGAA GTCCATAGCT CACTGTTCAA 
TCCACTCTTG TCGTATCATT GGAATCTGTC ATTAAATCGC TTTTATTGAC 
ATTTATACAT ATTTCTGTTG TTGATGTTAT GAATTACTTA CTAAAACATG 
ATTGTTATAT CTCAAGAAAT TTTCTAGTTT GTGTGGGTTG TTTTTAGATT 
CTCATGAACC TTTAGATTTC TTATTGTGTT GATATTCTCC ATTCATTCTG 
AAGAATATAT GTATGTGGAC CTTGAATGTT CAGGTAATGG ACTTTCCAGG 
AGGAAAGGTA GCTTTCACAC CTGAGATTCA ATTCATATCA GAATCTGATA 
AAGAGCGTGT TCCTTGCTAC CGTGTTCTTG ATGACAATGG CCAACTTATC 
ACCAACAGCC AGTTTGTTCA GGTTTCACAA AAAAAACAAG AGAAAGAATT 
AATCTTTTCC TCTTTTTGCG AATT

AT5G09300.1

Model type: Protein coding
Short Description: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Computational Description: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT1G21400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09300.2

Model type: Protein coding
Short Description: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Computational Description: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT1G21400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR