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52-0525-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2127914 [Map]; Strand: w
      • AT1G06923.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: ovate family protein 17 (TAIR:AT2...
        Distance: 0; Region: exon2 (3UTR)
      • AT1G06925.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon3 (CDS)
      • AT1G06930.1 - [+] show detail - unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - ...
        Distance: -929; Region: promoter
    Flanking Genome Sequence: 52-0525-2 - 3-prime edge 
    CTCTTCGGGT AGGTCCGTCT ATAAAACGTA ATTTGAGGAA GTTTGACTAC 
    ACTGGCCCTA TCACCATCAC TGCCGTTGGC GTACTATCAG AGGTCCCTCG 
    AGATTTCCTT GAAACCACTG GAGAGTGGAG TCAGTCTCTT TCTCAAGTCT 
    TAGTTGTTTC TGAAACAGGT CCCACATACA TGGTTTCGCT TTTCATTGAC 
    TCCCCTGATT CTAAGATTCC ACGTCCACAT AATACCTATG AAGACGACGA 
    GGCTCCCCCT TGAATATTTT CCGGAGAAAT AATGCCTACT ACCATTGGTG 
    AGGGAAGAAG CAACCAAACC TTGAGATTTA CTCATCTTTT GAATT

AT1G06923.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: ovate family protein 17 (TAIR:AT2G30395.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06925.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT4G20480.1); Has 152 Blast hits to 136 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06930.1

Model type
Protein coding
Computational Description
unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink).
Link
InterPro Scan - TAIR