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52-0541-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7969160 [Map]; Strand: c
      • AT5G23640.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -658; Region: promoter
      • AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
        Distance: -652; Region: promoter
    Flanking Genome Sequence: 52-0541-1 - 5-prime edge 
    CCTATATATC TTCAAACAAT TAAATTTTGG GTCTTAATGA TTTTAAATAA 
    CTAAATATGT GGTCTCTACA TTTTTTTAAA TAATTGAATA AAAATAAAAT 
    ACATTTTTCT TAAAACGTGG AAACCACATA TTTAATTATT AGAAATTACT 
    TAGTAAAACT AAATATATAC ATCTTAATTA TACTTTTTTC TTAATTTTAC 
    CAAAAATAAT ATATATATAT ATATATATNA ATNAATTNCC TATGTGTAAA 
    NGGATATATA TGTNNAAAAT AATCNTGTGT CTATNTAAAN ACGTCATTAT 
    AGCTGACGAT ANTGGCCANG GACTAAGCNT GAACATTTNG GNACTCAAGT 
    CGGTTTCGGT NTGGGTCTTT CGAGTNCGGG TTTTTCGGGT TTAGAAGTTT 
    ANGATCACCA NCNCGGGCCG TNNACCACCG GGGNCNATAT AGGNNNNAAT 
    NACCAGCNNG GGCNNGNN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7969154 [Map]; Strand: c
      • AT5G23640.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -652; Region: promoter
      • AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
        Distance: -658; Region: promoter
    Flanking Genome Sequence: 52-0541-1 - 3-prime edge 
    TATATAGGTC AATGTATTAA AACTTAAATT TTGCCTCTAA GAAAAATTTC 
    ATTAACATAA AAGTTAAATA TATAGACCAA TGTATTAAAA AATATTCTTA 
    TGATTCTTGT CTCACTAGGC GTGTGAAAGA ATATTCTACA TCAAAATATA 
    ATGGAATCTT AAGATGTTAT TTAATATTAT TTTCTTAAAG ATATATAGGG 
    CAATTTATTA AAAGTTAAAT TTGGCCTCAT GACTTTAGAT GTGTTGGAAT 
    TGCAAAATTG TTGCTTGACA GTTGACACCA GCACAATTTT ATTTAATCCT 
    ATAAAATGGA AAACTTTATA TTTAGATTTA TTTCTATGTG CTGCCAAGAA 
    AAGAAGATTT ATTTCTATAT ATTATTTTCC TAACATAAAA GGAGTCAATT 
    GATATTATAT ACCATTTGTC GTATGGTACA ATGTATTAAG CACCATAATT 
    AGAGAAAAAA AAGGAAAATA AAAATATTGT GGTTTTAACT ATAAATACTA 
    TAGAACTGGT GTTTTGATCC TTTTCCATCT TCTGTTCATA GTTCTTGAAA 
    TAATCAAAGG TTGGGGTTCT TACTAGTCTA TCAATACTAG TTTGTGGGGT 
    TCATAAAAGA AAGTTTACGA TTTCAAATCA ATTGTTTTGG TCTTTTTTTT 
    TCCTTTGGTC GGAGAGTATT TTGGTTGATC TAAATTGTTG AGNAATANAT 
    TTTTTTGANA AAATGAATTG GGACAGGAAT

AT5G23640.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23650.1

Model type
Protein coding
Short Description
Homeodomain-like transcriptional regulator
Computational Description
Homeodomain-like transcriptional regulator; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G08520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR