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52-0545-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23106988 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0545-1 - 5-prime edge 
    CTGCTCTCCC CATCTCATAG TTTCTCGCCA TGAAGTATGA TTTCATTATC 
    ATGTTGAATG TGTGTATCGA TGGCTCAATT TCGTTCTGGA TCATCTTGTT 
    GTAGATCCTT GTGGCATGTT CCGGCATTTT CTGGTTCGCC ATCAGTTTGA 
    TCAACGCATT ATACGTTTTG CCATCCGGAG GATGTCCCTT TTCTTGCATC 
    TCCTTGAGCA GTTCGTAAAC AGTATCCAGC TTCTTCTGAG TCCCAAACCC 
    CGTGATCAGA CACGTGTAAA CCGCAGCATC AGGTTGCAAC CCGGAATCAA 
    CCATGTCATC AAAGTACTCA ATGGCAGTTT CCATGCTCGA CTGTTTGCAG 
    AAGTCCCGGA TCATGATGGT ATAGCTACGG ACATTAGGGC AAGGTCCCTT 
    GGATTTCATA ACATGGAACA ATTTGATCGC ATCTGATTTT TTCCTACTCC 
    TCAACAACCC TTCAAGCATT ACGTTGTGAG CTACAATGTC AGGTTTCAAT 
    CCGTGATCAA TCATATCATT CCAGATTCTA GCTGCTTCTA TCAAGTTCCT 
    CACCCTGCAC CAACCATTGA GTAGAACAGT GTAAGTCATC ATATTAGGTG 
    TAAACCTCTC CTTCAGCTTA TCAAACAGAA CCTGAGCTTC TTTTCCAAGC 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23106872 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0545-1 - 3-prime edge 
    GAGAGCAGTT TGGGAAGAGA TGATCAAGAA AGGGATTTGT CCTGACGATA 
    ACTCCTACAC GGTTTTGATC AGAGGGCTTA TAGGTGAAGG CAAGTCGAGA 
    GAGGCATGCA GATACTTAGA GGAGATGCNT TGACAAAGGA ATGAAAACCC 
    CTTTGATTGA TTATAACAAG TTTGCAGCTG ATTTCCACAG AGGGGGGCAA 
    CCGGAGATAT TTGAGGAATT GGCACAGAGA GCTAAGTTCT CAGGTAAGTT 
    TGCTGCAGCA GAGATCTTTG CGAGATGGGC TCAGATGACT AGAAGGAGAT 
    TCAAACAGAG GTTCATGGAA GATTGATGAC TTGGGGGCGG GTAACTGGAT 
    CGTTCAACTC ACTCACTCGG AGAAAGCT

AT3G62470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link
InterPro Scan - TAIR