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52-0568-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9684424 [Map]; Strand: w
      • AT5G27420.1 - [+] show detail - carbon/nitrogen insensitive 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0568-1 - 5-prime edge 
    CCTGCNGGAG GAGCTANGAG GAGAGTGACG AACGCANCGG TGGCGGCTGT 
    GGGTTANACG GCCGGAGACA NATCGAGACG GTTTCCTGAC TTTTGTTTAC 
    TCAGAAGTGA AGACACAGAA GATTGGTAAA GGAGCNGTTG GAGTGTGCGA 
    TTTGTTTGAA TGAGTTTGAA GACGATGAAA CGCTGCGTCT GTTGCCTAAA 
    TGTGATCACG TGTTTCATCC TCATTGTATC GGCGCTTGGC TTCAAGGTCA 
    CGTGACTTGT CCGGTTTGTC GGACTAATCT TGCTGAACAG ACGCCTGAAC 
    CGGAAGTGGT GGTGGAAACC GATCTTGAGG CTCAGCAGCA ATCGGCGGTT 
    CCTGAACCGG TGGTGGAACT TCCACGTGTT AAATTCCCGA GGTCGCATAC 
    GACGGGGCAT TCGGTGGTTT TACCGGGAGA GAGTACCGAC CGGTTTACGC 
    TTAGAGTACC GGAAGAATTA AGGAAGAAGA TAATGGCGAA TTGGAAATTG 
    AACCGGTCGA ATAGTGTTTT TGTTTTACCG AGAGGAGGAA GCTCGAGGAG 
    TGGTAAACAG GTTGACCGGT CGAGGGCTAA ATCGGACCGG TGGTTGTTTC 
    GTAAAACGCC TTCGTTTCTG TGGCGGAACC GGGATGATGG TTNGATTAGG 
    CTAGGTTGGT ACCNGNTNGT GTTAGAGGAA ATTCATTAAC ANTTCGACCG 
    GTGACTNGGT CNAGCAGACT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9684349 [Map]; Strand: w
      • AT5G27420.1 - [+] show detail - carbon/nitrogen insensitive 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0568-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGGA 
    GTAACGCTAC CGTCTACTGC GCCAGTACAG TGACGTATAT AGACGGTGAA 
    GAAGCCCATA AAGAAGAGAG CTGCGATGAC AACTACAACG ACAACAGCCA 
    TGGCTGGACT TAGACTGCCG CTGTAAGCAT ACNGGGTCAT GTCTCTGGTC 
    CGGGGTTCCG GGTTGACCCG CCGACACGGA TAAGAGAAGA AACAAGACAA 
    GAACTGGTAA AGAGATGTGT TTTATGGGAT C

AT5G27420.1

Model type
Protein coding
Short Description
carbon/nitrogen insensitive 1
Curator Summary
Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings.
Computational Description
carbon/nitrogen insensitive 1 (CNI1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR