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52-0646-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 303923 [Map]; Strand: w
      • AT5G01780.1 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G01780.2 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0646-1 - 5-prime edge 
    NCACTGGAAA TTGAATATAA ACTATGAAAG CATGAGAGCA TTTTTTTCCA 
    ATCAAATTCA TGCGATCAGC GGCATAGTAA AAATGGTTCA AAATCAGCGA 
    AACTAGGTTG AAAGATAATA GTCTAGAGAA TGCGAAAACG ATCACTCACA 
    TGCGTCTTTG GGATCGGAGA GTGAGGAGAA GAACTCATTA TCGTCCTACT 
    CGCCGACGGA GAGCACAGCC GAAGGACGAT CTGGTGGCGG GAAGTAAGAT 
    GAAACGAGCG ATGGATAGAG TTCAACATAG TCGAAGAAGC CTCGATTTAT 
    CGGCGACGAC AAGAGACGCA TCGTCTTCTA CGCCGTCGGC GCAGAGCCTT 
    CTTTCTAATT ATATATTGAT CTTCCCGAGA ACACATCAGT AATTTCAAAT 
    TACACTATTT TAATTACATG GGCCCATGGG CCTCGTAACA TAGATAGCAA 
    GGGTCTTCCA CATTAATTTG TGGGAGCGAA ATGAGTTTTC TACGCGCACG 
    ACAGGCGGGT GATGAACACG CTCGAATGGT AGCCGCCGAC ACCTTCCTTA 
    ACTTATTAAC TCANCATACT TTANTGTCAA ATCTTAGTTT ATGTCANNNT 
    TCNNACGTNT TGNNCATNTA ACANGAAANN GGTNNNTTNA AATCTTGACT 
    CTAANCCTAC CAGGTATATA NAANAAAAGA AAGATGTGTA N

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 303807 [Map]; Strand: w
      • AT5G01780.1 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G01780.2 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0646-1 - 3-prime edge 
    TCCAGTGGCA TACCATATCA AGTACTGTTG TTTAGAGATT ATGAACTCTC 
    CATTGGCTCC CAGTGATTTT CCTATGATCA AAGCATAATC GTGGCGGTAT 
    CTAAAGGACA CGTTATGTTA ATTCTGTTAA GCAGACTGCA TCGCTTGACT 
    CACTTAATGA TTATGAAGAG CAATTTCCAC CACTTACTGG TGGCTCTAAG 
    ACGAAGAAGT TTTATCTTGG TTCTACCAAT CCTTCTACTC CATGTCAAAG 
    TTCACAGCTT CAAAACTGGA CAAGCGGTAA GGATGCTTTG TCTTTGCAGA 
    GGAATTTGGG ATGTAAGAAT AGGAGGAGGA GACGGGCTTC ACGGTTTTTA 
    CATGAAGAAT CCAATGGGAC AACTTTTGAG GTTGGCGCTG GTATTGGCTC 
    TCCAACAAGT ATGGTTCATT TTGATTCTAC CAACCTTTCT TCTTCTAGTA 
    AAAGTTCACA ATCTCAAAAT TTGAAAATCC GCAAGGTTAG GAATCACAGG 
    AATT

AT5G01780.1

Model type
Protein coding
Short Description
2-oxoglutarate-dependent dioxygenase family protein
Computational Description
2-oxoglutarate-dependent dioxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01780.2

Model type
Protein coding
Short Description
2-oxoglutarate-dependent dioxygenase family protein
Computational Description
2-oxoglutarate-dependent dioxygenase family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1).
Link
InterPro Scan - TAIR