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52-0716-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19665366 [Map]; Strand: c
      • AT2G48075.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -599; Region: promoter
      • AT2G48080.1 - [+] show detail - oxidoreductase, 2OG-Fe(II) oxygenase family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 52-0716-1 - 5-prime edge 
    GACTCCGGTA AGGTCCAGCC GCCGCCCACC CTATGGAGAC CAGGCACCCC 
    TTCTCCTCTG GTGATGCTAG CTCCGGCGCC CAAGAGGCTA GACGCTGGCA 
    CTGGAGTTTT CTTGCCGTGG ACACCGCCAG TGTCAAGAAA ACCAGCCAAG 
    CATCTCCCGC CGCGTGTCCA GAGGCTGCGT CTCTTGTCAT CATCAAAGTC 
    AGTGGCAGAT AGTGAGTCAT CGTCGCCAGA GATAGGAGTG AGTTGAGTTG 
    GAAAGTGTCA CACACGGAAG CTCTTTCTTT TTCCTTTACT TTTTTTTTAA 
    AGCANAGTCT TTTGGTTGTA CACTTGANAG TTTAGTGGGT TTTTCTTGTT 
    TCTTCCTAAC ATTTTGCTTT CCTTTTATTT GGTCAATTTT ATAGAACGAA 
    NATTAGGGTA TTATGCTACA TCATCTACTG TNGTTACATG ATTCACTATT 
    TGTATTAAAA ATCTTTAGGA TATGCCCCAC CACTTGCCAT TAATTTCAAA 
    TATCTTCAGC TTCAATCAAN AAAAGAGGAA ACTTGATTGA TACAAATATT 
    CCTGAAACTG CTTNCTCANT TAANGTANAA GAGGATGAAN AAGGAANCNN 
    AAANATTCTG GGNTTTNTNN TTNTTTTATT GGGATAAAAN NACNCNTNNN 
    TTNCANTGGN TNANTTNNCC CATNTAANAN ANNNGNNGAN NNANNNNAAC 
    NNGAGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19665482 [Map]; Strand: c
      • AT2G48075.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -715; Region: promoter
      • AT2G48080.1 - [+] show detail - oxidoreductase, 2OG-Fe(II) oxygenase family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 52-0716-1 - 3-prime edge 
    CCGGAGTCCG GTTTGAGTTT GAAGAAGGTG ATTGCGACTC TTTTGTTGGG 
    CGAGGGACAC ATTACATGCC TAGCCGTATC TGCACTGTTA CCCCTCATCA 
    CCAGCAACGA CCTACGAGAT TCATTTTCTG ATTAGAAAGA AAACTCGGAT 
    ACAATCAACA TCGGGGGAGT GTTTCCATTA CCCTTCCTTA AGTGGGAGAG 
    TGAGTGAGCC TCTGAAGTTG CCATCGTTAT CGACCCCGAG TCTGTGCCCA 
    AACACCATGG TTGATTCAGA CAAGACAAGA GTGGATATGG GTTGATCCAC 
    GTGAGGAGGT TTCTGAAATG GTTGAGAGTG TTCGTCCTGA AAACAATCCC 
    AAACCTTAGC TGGAAGGAAG GATCGAGAGA TGGTGATCTG GATTCTGGAA 
    ATGGAAGTGT AAGTAAGTAC CTCATCGAAG AAGTTGATCA CACAGCCATT 
    TGGTCGTTTG TATTCAGGAA TCAGACGCCA TTGAAGAAGA TGGTCGATAA 
    CACTTTGGAC AAGGGTTGGG ATAGGTTCCA CTGCAAGGAC GGGTTATAAA 
    TTAGGAGATG GTATGTATAT GTCTAGAAAT AGCGGAAGCA CCAAGTCCCT 
    GCCTTGTTGT CATTACCAGA GTGTTCATCC GTGGTGTTGC CGAAATAGGA 
    ACTNCAAGCT GAAGAACTCT CTTTTGGGTC CCTTGGTGTT CTTGTTGAAC 
    AGAACGAAGG TCTCCCCTGC ATTTGA

AT2G48075.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48080.1

Model type
Protein coding
Short Description
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Computational Description
oxidoreductase, 2OG-Fe(II) oxygenase family protein; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 179 Blast hits to 160 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR