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52-0753-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1829840 [Map]; Strand: c
      • AT1G06040.1 - [+] show detail - B-box zinc finger family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G06040.2 - [+] show detail - B-box zinc finger family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0753-1 - 5-prime edge 
    AAAGCAACAA GCAAGATTCA TCAAATCCTT ATCTTCTCTC TTTCACTCAC 
    AACCAATTGC TCATCCCACC TACTTGTTCC CCACAAAACA CTCTCTCCCT 
    CTTTGTTCTT TCATCTTCTC TAAGCTCTTT CTCTGAANCT ACGCTNNTGN 
    TAGGCTATTC TGAGAGAAGC CAGACTANCA ATAAANCCTT CATTTTAAGC 
    ATTCTGTTTC CTTCTTGAGA AACCTAGATA TTTTGGTNTC TTGTATCCGG 
    TGATGAANAT ACAGTGTGAT GTGTGTGAGA AAGCTCCGGC GACGGTGATT 
    TGTTGCGCCG ANGAAAGCTG CTCTCTGTCC TCAATGCGAN ATCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1829956 [Map]; Strand: c
      • AT1G06040.1 - [+] show detail - B-box zinc finger family protein
        Distance: -66; Region: promoter
      • AT1G06040.2 - [+] show detail - B-box zinc finger family protein
        Distance: -66; Region: promoter
    Flanking Genome Sequence: 52-0753-1 - 3-prime edge 
    GTTGCTTTGT TTTCATTATT CTGCGTATCA AAAGGAAACA CTCTGCTTCT 
    TACAGCAAGG TCTTGCGGGT CCCACTCTTT TTCTGTGGCT CTCCTTCTTC 
    CTCTCGTCAT CTCTCCTACC TTTAGATATT TTTATTATAT TCACACNTTT 
    GCTATTTTAT ATTCTTGTTA TTTTCTCACG TAGTAGAGAT TTGTGTTTTG 
    TTTACTAATC TAGTCAAAAC ACATTAATTT TGACTAATAA ACTAACTTCA 
    ATAATTCCAC CACCACTAGA CTTTTACGCT CCTTTTATAT GATATGCTCG 
    AATTTCAAGT CTCGTGAACT TTTACGATTT CAAGAAAGAT TTGTATACAA 
    AAATGGGCTT CATCTAGAAA GAAAGAGTTG GGTAATGGTA TTACTCAAAT 
    CAGAGAATAT TACACGACTA CACGTAATCT TGAAAATGAC ATGTGAATTG 
    ATTCCTTGGA ATGACGACAT GTTATGTTAA TATGTACCAT TCGATCAGAT 
    TTTTCTTCTT CTTTCACTTT TTCGTTTTCT CAATCATAAA AACGATTAAT 
    GCAATCATTA AAAATATACT GGCATGTTAA CTAACAAAGA AATGAATGCT 
    TAGCCGGGTT AGCCCGTTCG AGAAAAAGAA TGATCCTAAA AGACACCAAT 
    ACAAAATTAG GCATGGGTGG GTCACAAGAA TTGTTGTTGG ATATCACATA 
    TCCATCCATA TTAGTAAAAA CCAATCTATA CATCTGTGGG T

AT1G06040.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Curator Summary
Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.
Computational Description
SALT TOLERANCE (STO); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1); Has 1912 Blast hits to 1325 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1809; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06040.2

Model type
Protein coding
Short Description
B-box zinc finger family protein
Curator Summary
Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.
Computational Description
SALT TOLERANCE (STO); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1); Has 1915 Blast hits to 1323 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1814; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR