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52-0832-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25793165 [Map]; Strand: w
      • AT5G64520.2 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: 2801; Region: intergenic
      • AT5G64530.1 - [+] show detail - xylem NAC domain 1
        Distance: -2068; Region: intergenic
    Flanking Genome Sequence: 52-0832-1 - 5-prime edge 
    TCTGAATCTA TGGGAAGTGT TTGAGTTTGT GTGGATCTCA ATTTTATAAC 
    AAAAGCCATT GATTGCTACT TGAGGGAGAC TCATGCATAT GAATGAGAAA 
    GATTGATCAA TTTAAAAGTT TTCTTCATAC ATACATAAAT CATTAATATA 
    CTTATAAGTT TAGTATAGTT ACTTGGATGA ATCTGAGGTT GCCTTGCCTC 
    CAAGGCACCC CTTAATTTTA AAGAGAATCA GTAATTTAGT TAAATCGATC 
    TCATGAGATG TACAATATGA ACTCAAGTGC GTTTAGTTTA ATCCATTAAA 
    ATATGCATCA CTTGTTTCTT TTTGTAATAT TTTAGTTTGA GTATAACGAT 
    TGTAGAAACT TGTATTAATG TATACTGTAT ATAGCAGGGA ACATCATACG 
    ATATATACCC AGCTTTTTAA TACGAAATTA CCTATATTAC GTTAAAATTT 
    ATTTGAAATA TATAATATTT CTAATACGAA GATTAGTATA TTGATTTGTT 
    ATCAATAATT TACAAACGTT TTCCTAATCG AATTGGTGAG GTAATCTGAT 
    CTGGCGGCGA GAACAAGCAA TAAACGTTGA TCTACGATTT TATATATTTT 
    CGAGTTGTAT GGTCGACAAC TACATACNGG AGTTTTAGAG TTTTTAACTT 
    TTATAAGTGG TGTATTATAC CATCCAAATT TTCATGTAAG NGANGTTTTT 
    TTTTTCCTTT NTTGGNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25793089 [Map]; Strand: w
      • AT5G64520.2 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: 2725; Region: intergenic
      • AT5G64530.1 - [+] show detail - xylem NAC domain 1
        Distance: -2144; Region: intergenic
    Flanking Genome Sequence: 52-0832-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTGT 
    TCAACTATAG ATTTTTCTCC TCTGGACCCA CTTCCTCTCT TAAAATAATT 
    GGTCTCTAGT ATTATTTGCT TCAATTAATT GACTTCTTAT TGCTATTTTA 
    CTATTATTGT TTTCACTTGC TTGCTTAAAA TAATTGACTT GTTATATACA 
    GTATTGCTAT TACTATTGTG TTTTTTCACT GTTCTCAAAT TTTAAAAACT 
    TAATAAGCAA TTCATCAGAT CAATTAAAAA AAGAAGAAGA AGAGCATAGG 
    AGTAGGCAGC CCCAATGAAT AGGAGGAGTG TGTGGGTGCT CCTCAAACTT 
    TGCTTCAGAT TTCTCCAATG TTTTTAAAAT TAAGAAATTC TGTTGTATAA 
    CAACAAATTG TGAACATCAA ATTTCTTTGA TAATATTATT CTCTAGGGCA 
    AAATGGTCAA AACACGTAAG TCACATTTGG ATGATCTATT GCTTACGCTT 
    ACGCAGGCAC ATGCCCACGC CACACGCGTG ATCGAAAGAT CTTTGTCTTC 
    TTTAGTTTTG TCCTCATTAA CTAAGTATAT AGACTATAGT ATTTTTCATT 
    TTCATTAGAC TTATTAAATA ATAGATGTTT ATATTTAGTT ATTGCTTGCA 
    TTTATACTAA TCCACTAAAA ACATATTGAA AGCTAGAAAG CCAACGTGAG 
    TGAGTGAGTG AGTGAGTATA TAGTGATCCG AAAAGTACAT NCNACATACA 
    ACGGAGTGAA TAAACTTGAT ACATATTGGA CGATCAAAAA ATAAT

AT5G64520.2

Model type
Protein coding
Short Description
homolog of X-ray repair cross complementing 2 (XRCC2)
Curator Summary
Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.
Computational Description
homolog of X-ray repair cross complementing 2 (XRCC2) (XRCC2); Has 215 Blast hits to 213 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 37; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64530.1

Model type
Protein coding
Short Description
xylem NAC domain 1
Computational Description
xylem NAC domain 1 (XND1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 25 (TAIR:AT1G61110.1); Has 2741 Blast hits to 2738 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2741; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR