1. Home
  2. Mutant Lines
  3. 52-0837-1

52-0837-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26263832 [Map]; Strand: c
      • AT5G65683.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 49; Region: intergenic
      • AT5G65690.1 - [+] show detail - phosphoenolpyruvate carboxykinase 2
        Distance: -2508; Region: intergenic
    Flanking Genome Sequence: 52-0837-1 - 5-prime edge 
    CTCTCTGCAA TACAAAAGGC CACACCCGTC GGCTACTGCT TGTCGCTATC 
    ATGCACCTAT GTGGGTCTTT TTCTGAATAA TCATACTTCT ATTATTTATA 
    CCTTACTAAA TTATTGCTTA TCCTCCTTAT ATAAATTATG TACCATTATA 
    TATTCAAAAA TCATTGAAAT CGAATTTTCG AAAAAAAGGG AAATTAAAAT 
    TAAAATCTGG CGTTTTCCAA GCCGTGCATA TCGCTGACTC GATTTAAATG 
    CTTCCTCATA ATAGCCACTT TAGCTAATTT CTCGGCGGCT CTCCAAGCCG 
    AAGTAGGGGT AAGCTGCTCC GGTTTATCTT CAGTTCGGTT TAATATACTA 
    TTTCTCGGTT TAATCCGGCT AAGTTCATTT AGCTCAACCT CCAAACTCCT 
    TAAACTATCA TCCGAATGAG ACGCATTGGA CCGAGCCGTC GTTAGAACCT 
    GATACGCTCC GGATAAATCC TCACGCTCGA TAAGCCGGCG TGAATCCGCT 
    ACAGCGCGGC ACATGGAGTG TAAATTTCTC AGCCGTTCGA TGCTTGAAGA 
    TACATATCTG ACGGATTGTG GCCGTGGGAT CAAAAATCGT TTTTCTTTAN 
    GACATGTCAT TGGCTGATGT GTCATTTGGG TCAACGATCG ACGACTGTAC 
    GGACATTACT TGGTGGGAAC CACTCGACGA AGTCGGCACT TTGAGCTCAA 
    CGAGAAACTC TCTCTCCTCC TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26263948 [Map]; Strand: c
      • AT5G65683.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 165; Region: intergenic
      • AT5G65690.1 - [+] show detail - phosphoenolpyruvate carboxykinase 2
        Distance: -2392; Region: intergenic
    Flanking Genome Sequence: 52-0837-1 - 3-prime edge 
    GCAGAGAGAT TGAGACCCTA CATTAGAAGG AATTAATTGG TCTTTTAGCT 
    TTTTTATCTT CTTCTTCCTT TTTGTAATCT TCAAAAACTC CAAATTAATG 
    ACTGAATAGT TAAAAAAAGT TGTAGATCAA ATAAATGAAG TCTGCTTTTT 
    TTGTGTACTA TATAGAATTA AAAGTTGAGG TATAGTGGAT TAGAGAGTGT 
    GCNTTGTAAT GCTGGACTTC AAAATCAAAA GTTAAGTTTA TATTATCATA 
    TGCCGTTTAA CTTAAGAGGA TCTATAATAT ATTATATCTT TCCAAATGAA 
    TGATCATGAT TAGTCATGTG ATCATCATTA TAGCCTATTT TGTTATAGAA 
    GGCACCGGGT TTGAATGATT TGAATAGTGC GTGGGGATTG TCTTTGTTGG 
    TTGTTGGTGA ATGGTTTGGT GGGTGCACCG TGGTAGAAAC CAGGTCATGC 
    GCCGTTGCAA AGCTN

AT5G65683.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G37890.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65690.1

Model type
Protein coding
Short Description
phosphoenolpyruvate carboxykinase 2
Curator Summary
Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).
Computational Description
phosphoenolpyruvate carboxykinase 2 (PCK2); FUNCTIONS IN: phosphoenolpyruvate carboxykinase activity, purine nucleotide binding, phosphoenolpyruvate carboxykinase (ATP) activity, ATP binding; INVOLVED IN: gluconeogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, root, flower, trichome; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210), Phosphoenolpyruvate carboxykinase (ATP), conserved site (InterPro:IPR015994), Phosphoenolpyruvate carboxykinase, ATP-utilising (InterPro:IPR001272), Phosphoenolpyruvate carboxykinase, C-terminal (InterPro:IPR013035); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxykinase 1 (TAIR:AT4G37870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR