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52-0854-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30124734 [Map]; Strand: c
      • AT1G80070.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: 52-0854-1 - 5-prime edge 
    ATCAGTTGTA TAGTCCATGA ATTTGGCCCT AGTATAACGC TCAATATCAT 
    GAGAGTCATA ATCTCCCCAT CGAAGTTGCA CATCTATCCA ATACTTGTTA 
    CTCGCTTTCT GGTCGAACAT ATCCTTCGAC TCTGCAACCA GGCTAGGCTT 
    AGACATTGGC CATTTATGAG CAGCAAATAG AAGAACATCA GCACAAGAGC 
    TGTTCATTTT ATAACTCTTC CTTGGATGAA TTGTCTCCTT CTGTACAGTT 
    TCTATCTCCA AAGCGTCCAA CTCTTGGTCC AATACTTGGC AGAGATCCAT 
    AACAACACTC TCATGGATCT TCTGCCACAA ATGGGCACGG AAAATCTGAA 
    TCAAAGATAT CTTAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30124798 [Map]; Strand: c
      • AT1G80070.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: 52-0854-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCAACTGAC AACATGTCTA TCTATCCATC TCCAACAGGT ATTTATTACT 
    TTTTCCATTT TACTTTGTTT TGTTAGTCTT TACTTTTCTG CAGTATGTAT 
    CAAATTTTCT TACTAAATCT GTGCAGGTGT AATGATTGGG CNTTGATCTG 
    GCATACAACC TGCATTCTGC CTTTGGTAAT TGGTTCCCTG GTTCAAAGCC 
    TCTTCTTGCT CAAGCGATGA ACAAGATCAT GAAGGTAATC AATTTTCTTC 
    TTGGGTGTCT TTTGCAGTAC TCGTTTTGTT TAGATCTATG ACTTACCGTT 
    TAAAATTTAC ATATTGCAGT CCAATCCGGC TCTATATGTG TTGAGAGAGA 
    GGATAAGGAA AGGTTTGCAG CTATACTCGT CTGAGCCTAC AGAGCCATAT 
    TTGTCATCTC AAAACTATGG TGAAATATTC AGCAATCAGA TTATATGGTT 
    TGTTGATGAT ACCAATGTTT ATCGTGTCAC GATTCACAAG ACATTTGAAG 
    GAAATTTAAC GACAAAGCCA ATCAATGGTG CGATTTTCAT TTTCAATCCA 
    AGAACTGGGC AGTTGTTCCT GAAGGTATTT CTTCCTCTCC CGCACTTCAC 
    TTTAAGAACA GGCATATATG CATTGTTCTA CAAAACTACT ACTTCTGTTT 
    CTCTAGTAAC AGGCTACAGA ATCTTAAGTA ACTGTTTTTT CTTGTCCTTT 
    AGGTTATCCA TACAAGTGTT

AT1G80070.1

Model type
Protein coding
Short Description
Pre-mRNA-processing-splicing factor
Curator Summary
a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality.
Computational Description
ABNORMAL SUSPENSOR 2 (SUS2); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), PROCN (InterPro:IPR012592), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT4G38780.1); Has 828 Blast hits to 729 proteins in 312 species: Archae - 0; Bacteria - 2; Metazoa - 333; Fungi - 220; Plants - 69; Viruses - 2; Other Eukaryotes - 202 (source: NCBI BLink).
Link
InterPro Scan - TAIR