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52-0872-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1992433 [Map]; Strand: c
      • AT4G04145.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0872-1 - 5-prime edge
    TCANAGTGAA AACTTTGTCG ATTGCTTGAG CCATGGTTGA NTAGAGGAAC 
    AGAGGAAGAA ACNAAGAAAC NNAGTGTTTG TGAAAGAAGA AGAAAGAATT
    TCGAGAGTGG CGGCTGCTGA GAATTTTAGG TTTTAGAGAG AAGGCTCTGA
    TACCATGTTT NTTTTTTTNT CTTGATGCCC TTTCTCTACT CATNGGTTNA
    TACAATATAT NCACATNTAC GAGAATGTTC TCTACGTNAT ATCANTNCAC
    NTATGGCAAG TGAATANTAC GTATTCCCTT GTCTATCAGA NAATCCCTAA
    TCGCTCGTTT AAGATCGGGA TCAAGCCGAT TGGCCTCTCT TGATCTCGTG
    ATATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1975440 [Map]; Strand: c
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: -104; Region: promoter
    Flanking Genome Sequence: 52-0872-1 - 3-prime edge
    AACATTCCTC TTGTTCTCGA CATGCACAAG ATGAACTACG ACGCATGGCG 
    TGAGTTATTT GAAACTCACT GCTACAGTTT TGGAGTCTTC GGACATCTCG
    ACGGCACGTC CACACCAGCA AACGCCGCCG ACATGACATG GAAAGAACGT
    GACGGCATCG TTAAGATGTG GATCTATGGC ACAATCTCTC CATCTCTCCT
    CGACACAATT CTGAAAACCC GTAGCACCGC TCGTGAGATT TGGGCCTCCA
    TTGAAAACCT TTTCAGAGAT AACAAAGAGG CACGGGCAAT TCAACTCGAC
    AACGACTTAC GCTCTCTCAC CCTTGGCGAC CTGTCTGTGC ATGATTATTG
    CCAGAAGCTC AAGACACTCT CCGATCTCCT CGCCAACGTT GACTCTCCTG
    TCTCTGATCG TGTCGTCGTT ACGCATATGC TCAA

AT4G04120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT4G04145.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.8e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR