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Mutant Lines
52-0890-1

52-0890-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17904052 [Map]; Strand: w
- AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: exon4 (3UTR)
- AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: exon3 (3UTR)
- AT4G38170.1 - [+] show detail - FAR1-related sequence 9
  Distance: -506; Region: promoter

CTCTTTTGGA TGAGATCAAC CGTATTTTAA ACCGGCCAAA CTTGAAAGTT 
TTTTTTTGCT TCAAATGCTC TTTCAAGTAG AGTCCCTTTT GTTATTCACA 
GTTTTGTAGC TATTCTATTC TCTCTCCTTG GACTGGTGTT TTTGTTCTTC 
GGTTTTTCCG ATCAAAGTTG AATCAAGAAN AAGTTCGATA TGTCCGTCTT 
CGCTGTTTCT TGTGGTTGCT TGTTGGGCTT CTGTGCCTTT TTGATTTTTT 
CTATTTTGGG CCTGTGTGCC ATGTTTTCGG CATTTCTGCT TTGTTGGGCC 
TACGTGCCTT TTCGAGCCTT GTAGTTTTCT TTGTTTAAAG CACTCAATAA 
TTGTTTGTTG ACGGACCAAA AAACTCAAAT AGGCCCGACT TAATTTATTA 
TTTTAAGGGC CCAAAATTAA GGACTAGGCC TGCCTACCAG TCCCAACTCG 
CAACATTGGT TATGGTAAAC TAACAGCTTG CCGTTTTATG TTATAAAAAC 
GGCAGGAGAG TGTAGGCTTA NATAGACAAA CCCGTCACCG AGCTCGGTTG 
GATC

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17903936 [Map]; Strand: w
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon4 (3UTR)
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon3 (3UTR)
  - AT4G38170.1 - [+] show detail - FAR1-related sequence 9
    Distance: -622; Region: promoter
Flanking Genome Sequence: 52-0890-1 - 3-prime edge
```
CTCNCAACAC AGNAAATNGG GTNCNNGGNT CNNATNNNAG GTTCCNAAAA 
TATGCGNGTA GANNCANCNT NCNTCTCANT NTCANGTGGA GTTACCTNTT 
AATNGGGGCC ACCAAANTCN TCNNNNGANT CCNGGNNTNT TNCCCCNCNC 
TGCTTCNCNC CNACAGCTAG ACTGCATTGC TGCATATTCT GTTCTGCAGT 
TAGGCTAAGC AGACACTTCT TTTGCTTGTC GGTTGCTGCA ATAATCACAA 
GCCAATAATG ACACTGACTT ATCCAACAAC ATATACATCC CATTTTGATT 
GCAGTTGAAT ACCTGAAAAC ACAGGAACCA CTCTATGCTT CTCCACTAA
```

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR

AT4G38170.1

Model type: Protein coding
Short Description: FAR1-related sequence 9
Computational Description: FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR