1. Home
  2. Mutant Lines
  3. 52-0919-1

52-0919-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10349361 [Map]; Strand: c
      • AT5G28400.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1127; Region: intergenic
      • AT5G28405.1 - [+] show detail - transposable element gene
        Distance: 1180; Region: intergenic
    Flanking Genome Sequence: 52-0919-1 - 3-prime edge 
    TCCGAACGAA GGGAGGANAC TGCGAATTTT GTGGCGTACA AGAGCGCCAA 
    GTCGAAACCT TCCTTTTGCT CAAATCCCAC GTGGCGCATC AATTAAATAA 
    CTTTCTCTCT GCTACTCCAC TAA

AT5G28400.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28320.1); Has 2580 Blast hits to 2028 proteins in 270 species: Archae - 20; Bacteria - 158; Metazoa - 939; Fungi - 198; Plants - 144; Viruses - 14; Other Eukaryotes - 1107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28405.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 7.9e-30 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR