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52-0932-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20139139 [Map]; Strand: c
      • AT3G54390.1 - [+] show detail - sequence-specific DNA binding transcription factors
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0932-1 - 5-prime edge 
    GGTGCAATTA TGCGTTTCTC TGTTTGTATT TGTAATCTTT ATACAAACCA 
    TAAATTGGAA CAAAGACTAA AATGACAGTN ACAATATAAG TGAAAAACAT 
    AATTTCATTA GCTTTAAGTC ACGAGGCACG ACCATTGAAC ATGCGAGAAA 
    CGCGTGTANT TTTNNTCATT GGTTAGTTTT GAGAGCAGCA GCGTATTCTT 
    ACACAGTTCT CATATGTTTA ACTCCATTCA CTCTCTCAAA AGGTTCCCAT 
    CTTTATCAAA AGACTTGCTA AAATCTTCTC TTTCTTTCTC CTTTCATCAC 
    ACTCTTGAAG TCCTTGTCTC TGCTACTCCA CTAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20139253 [Map]; Strand: c
      • AT3G54390.1 - [+] show detail - sequence-specific DNA binding transcription factors
        Distance: -111; Region: promoter
    Flanking Genome Sequence: 52-0932-1 - 3-prime edge 
    NGAATTGNGC GGCGTTATAC TTACCTTCAC AAAAGTTAGT GGAGCAACCC 
    GTCACACACA CATACTATAG AGGAGAATAA AGAGAAAAAT GTGAGAAAGT 
    GGGTTACCAT TGAAAAATAG GGTTTCTTTT CTTTTATTTG TCAACTTGAA 
    AAAAGGTTTT ACTTTTGATT TTATTTTTTT CACAATAATG ATTTCNAAAA 
    TCTTCTGATG CAAATGCTTT TATTCATTTA GCTATAAAAG CCTTTTTGTA 
    TGCTTTTTTT TNCTCTTTTT AGGTGTATGG TGGANTGAGT CNGGCTGTTA 
    CNTTNATGTC AANCCAAACC NCAAANTCCA TTTGGCAAAA ATGGGAATGG 
    ACCTAATGGA ANTGGGGT

AT3G54390.1

Model type
Protein coding
Short Description
sequence-specific DNA binding transcription factors
Computational Description
sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 350 Blast hits to 341 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 343; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR