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52-0982-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5066768 [Map]; Strand: w
      • AT2G12470.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0982-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTTC TGATTCAGCA GGTCTAGGCA AAGATCCATC 
    AATAAAACTC CATTTGTTTT TTGATTCCAA AGCAATCGTC ATCGCAACAC 
    TCCAGCTATT GTAATTAGAT CCATCGAGGT TGTGAGAAAC AAGAGATAAA 
    CATGGATGAT CACCGGGGTG TAAGAAGAAA GGACTGTGAG AGCTGTCGAA 
    GGATTCAAGT CCAGAGGAGA TTCTTTCAAC TGAGTCACGA GTAATGTAGC 
    TTCCGAAAGT TATTCGATCA TCTGCAACAG CTCGAGAATG TCATGGATTT 
    GGAGATTGAG CTCGTTTCGA AGCGATCGGA GAAGTCGGAG GTGTTGAAGC 
    AGATCGAGCT CGCGTTCTCA TTCCTTTCTT CGCCATTGAG AATGAGAATC 
    GAACCGATGA GAGAAAGAGA AGAATGCGGA AGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5066721 [Map]; Strand: w
      • AT2G12470.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0982-1 - 3-prime edge 
    TGATTCAGAA CCTATACACA AAATCTGGAA TCGTTGCAAT AGTATGGTCA 
    AATATTGGCT TCTTAATGTG GTTAATCAAG AGATCTATGA TANTATATTG 
    TACTTCAATG ATGCAGCTGA AGTTTGGATT GATTTGATAA AGAGATTTCA 
    TATCAGTAAT TTGCCGAGAN NNTNTCNATT GGAACAGGAC ATACGGTCAT 
    TACGTAAGGA GCTTTGGATT TATCAACATA TTATACTAAG ATGAAGACCT 
    TATGGCAGAA GTTAGCCAGT ACAAAGTCAC NAAAGAGATG CCNATGCANT 
    TGTGGGAAGG TTGAAGAATT GTTAGAAGAT ACTGA

AT2G12470.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.1e-277 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR