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52-0995-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5535218 [Map]; Strand: c
      • AT2G13335.1 - [+] show detail - transposable element gene
        Distance: -1750; Region: intergenic
      • AT2G13350.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 1174; Region: intergenic
    Flanking Genome Sequence: 52-0995-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATTTTGA TTCAAAATTT ACAATTATAA AATTCTTAAG GATTCCCTAA 
    ATATATCTAC CATTGGAGTT GTTCTAACAC TTTGAGCTAA ACTATTCGTT 
    TTGGTATATA TTTTTTCGAT GTTGTTAAAG TATAAATGAT GTTAATTTTT 
    GATTTTTTTT GAAAAGCAAC AAAAAATTAA AAGTAATAAA ATAATAATAG 
    TAAACAGGAA TGTCAAGATA GTAGAACCTA CCTTACGGTT TTTAGTCTAA 
    TTGGTTTGAT TCTTAGAAAG TATCATTCAT TGTTAATCGA TATTTTACAA 
    TCTATACCGG TTCTAGAGCA AAAGACAGAA GTAAAACGAT GGCTGACAGT 
    GATCCGAGTG TGATGGCTAC TATCCCACAC GGCCACGGAG ACAAAACATG 
    TCGTGTTCTA ATTTTATCAT ATGATAAAAC AAAAAAATCA AAACTCATAA 
    CACGTACAAA TCCATAACCA AACTTTCCTA AAATATCCAA TTCTTTGGTG 
    CTATATTATT AGTTTAGGAC CTATTATAAG TAAGCAAAAG TCTTTGACAA 
    AGTAATTAAT TACTATTATT TGGTAATAAA AGAGACACAA TCATGAAAGT 
    CAGCTAAAAT TGAGTTTAAT ATTGAAAACC ACGCCTCTTA AAATATCGAA 
    ACTCAGATTA GAGTGAGGGA TATCTCTTGC GATATCAATT ACTCGGGATA 
    TCGTTGTTTG TAGATGGATC ATGAAAAAAA AGACN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16748083 [Map]; Strand: c
      • AT1G44070.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0995-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCGT 
    CATTGATATA TGACTCAACA ATTGAGCCTG CAACATATCT TTTGTTCTTT 
    GCTTTTCCTT TCAACTTTTT GAAAAACCTC TCAAATGGGT ACATCCACCT 
    ATATTGGACA GGGCCACCCA ATTCAGCTTC GTATGGGAGA TGGATAGGTA 
    AGTGTTCCAT AACATCAAAA AATGATGGTG GAAAAATCTT TTCCAAGTTA 
    CAGATGATTA AAACTAAGTT CTCTTTGAGA ATTTGAACGC GACTTGTCTG 
    TAAAGTTCTC GAACATAGGT CCCGGNTAAA ATGCTCCAAT TCCTGAAATA 
    TATATATGTG CAAGTTAAAT AATTAGATAA AAAATGTTGG CAAATAAAAT 
    AGTAAGTATT GTACCTGATA AGGCAAGGTG GACATTCCGA TCAAGGAGTT 
    CAGCAAAGAT AAATGGAAGT AGTCGTTCCA TAAAAACATG ACAATCATGA 
    CTCTTCATGC CTGAAAACTT TCCATTCTCC AGATCTACAC AACTAGCCAA 
    ATCGCTAGAA TAACCATCTG GAAATTTAAC ATCATGTTTC ACACATTGAA 
    ATAAACTCTG TTTGACTTCG TCTGTTAATG AATACGCTGG AAATGGAGCT 
    TTACCATTAC TATCAATATG TAAGCCTGGC CGTGAACAAA ATTTCTCAAT 
    ATCCATTCTT GACATGATAT TGTCTTTTGA TTTACCCTTA ACACGCAAGA 
    GAGTGTTCAT GATGTTGTCA AGAA

AT1G44070.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-142 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)
Link
InterPro Scan - TAIR

AT2G13335.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 9.7e-06 P-value blast match to GB:BAA84457 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902444|dbj|BAA84457.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT2G13350.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 331 Blast hits to 320 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 329; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR