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52-1008-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1362413 [Map]; Strand: c
      • AT2G04080.1 - [+] show detail - MATE efflux family protein
        Distance: -3160; Region: intergenic
      • AT2G04090.1 - [+] show detail - MATE efflux family protein
        Distance: 240; Region: intergenic
    Flanking Genome Sequence: 52-1008-1 - 5-prime edge 
    GTTAATATAT TTTCTATAAA GTTATTGATC AATACATTAA ATCCGTGGGA 
    TAAAGCTGTA ATGTATCAAA CAATTGCATT AAAAATATAA AACAATATAT 
    ATTTTAAAAT AATTTTTTTT TTAAAAATGA CNCCTTAATC TTGNATGCNT 
    TTTCTCTTTC TAATGATTAA ATATCTATGT ATAAGTTTAA CATCAAGTAA 
    AAATTTGAGN GACTAATTTA TGTTTGATTG GATTTTCCAC AGTTTATCTT 
    ATAAACTGAA CTCTCATATG GCTAAAANAT TTTACTTTCT TTCATTTAAC 
    AGTTACGGGG CGATTGAATG TTCTTTTAAC AAGGNCTGAT TTGAACGGAC 
    ATTANTTTTG TTTATACAAC AATGNGTTTC TNTNTNTACA GAATATAACT 
    TATNTNTAGT AAATTGNTTA TGTTGATCCC AGTTAAAAAA GATNAAAAGA 
    GAAGAGATGG NGCTNCTGAG GAACCAANAA ANAACTGGAA GTCAACAATC 
    AACTCATACN CATGNGTCTC TCCTTTTTAA TGANAGNGAC TAACCAACGA 
    TTTAAAATAA ATAAAAAGAG NGGTTCAAAT GTAAATAATT CAAACTACTA 
    ANACTTGGNG GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1362529 [Map]; Strand: c
      • AT2G04080.1 - [+] show detail - MATE efflux family protein
        Distance: -3276; Region: intergenic
      • AT2G04090.1 - [+] show detail - MATE efflux family protein
        Distance: 124; Region: intergenic
    Flanking Genome Sequence: 52-1008-1 - 3-prime edge 
    ATATTAACAA AGTTTAAGCT AATAAATTTA TTTGTTTTTT AATACGTGTG 
    TGAAAACCTT AAACTTACAT TTATTCGTGT ATATTTGGCA TGTGTGACCA 
    TGTATTCTCC TATATTTCGT GTATACTAAA CGGAAGGAGT ACAACTATAC 
    CAGTTACGTT TAAAAGTGTG TGATTTTCAC TCCAATGTTC TTCCAACTAT 
    TCTTTCTCTT GCCTTGGCAG CCTGCAATTT CCAATTGTAA ACAACTTCAG 
    TATGGGGTAA AAAAAAGATT CATCAAATGT CCAAAAATAT ATTTAAGATT 
    GCTATTGACC TGCTCCTCCC AACTCAGGCA AGCAGTGACT ATAGCTAGTA 
    TGATCCCTTG AGCAGTGGAC CCAACGATCA CACCAATCCA TAGCCCTTTG 
    CCGTTCATAT GACCCCAAAA TCCTAAGAAA AATCCAACAG GAGCTCCTAG 
    GAGATAGTAA GCCACCACAT TTGCCCAAGC TCCAATATTT TGCCACCCAC 
    TTCCCCTAGC AACCCCTTTT TCATAAAAGT CATATTTGAG TCGCGAGATA 
    GGATCTTTTA TTCACTAATT GAAGGGTTTG ATCTTAATAC CATCAAGCAC 
    TGAAGAAAAT CCATCGACCA TAAATGAAAG ACAAAGCAGC GAAGATAGCT 
    CCGTGACATA GTCCACAACT TCTTTGCTAT TGCTGAACGC GTAGCCAAAA 
    ATATTTTTGC A

AT2G04080.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04070.1); Has 9518 Blast hits to 9397 proteins in 1914 species: Archae - 186; Bacteria - 6503; Metazoa - 146; Fungi - 326; Plants - 1327; Viruses - 0; Other Eukaryotes - 1030 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04090.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04100.1); Has 9714 Blast hits to 9643 proteins in 1968 species: Archae - 172; Bacteria - 6792; Metazoa - 143; Fungi - 326; Plants - 1316; Viruses - 0; Other Eukaryotes - 965 (source: NCBI BLink).
Link
InterPro Scan - TAIR