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52-1009-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2132376 [Map]; Strand: w
      • AT5G06865.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G06865.2 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G06860.1 - [+] show detail - polygalacturonase inhibiting protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-1009-1 - 5-prime edge 
    ATAAACTAAC AAAATCGGTT ATACGATAAC GGTCGGTACG GGATTTTCCC 
    ATCCTACTTT CATCCGCCAT GGATAAGACA GCGACATTGT GTCTCTTGTT 
    CTTGTTCACA TTCCTCACGA CCTGTTTGTC TAAAGATCTC TGTAACCAAA 
    ATGACAAAAA CACCCTCCTC AAGATCAAGA AATCTCTAAA CAACCCTTAT 
    CACCTCGCTT CATGGGACCC TCAAACCGAC TGTTGCTCCT GGTACTGCCT 
    TGAGTGCGGC GACGCCACCG TTAACCACCG TGTTACCGCC TTAACCATAT 
    TCTCCGGCCA GATCTCCGGT CAGATCCCGG CTGAAGTCGG TGACTTGCCG 
    TATCTTGAGA CCCTTGTCTT CCGCAAACTC TCTAACCTCA CCGGTACAAT 
    CCAACCCACC ATCGCCAAAC TCAAGAACCT CCGAATGCTC AGGCTCAGCT 
    GGACGAATCT GACAGGTCCA ATTCCTGACT TTATAAGTCA GCTCAAGAAT 
    CTCGAGTTCT TAGAACTTTC CTTCAATGAT CTCTCTGGTT CCATTCCAAG 
    TTCTCTCTCT ACGTTACCTA AAATCTTGGC TCTTGAACTT AGCAGGAACA 
    AACTTACAGG TAAAGAACGA TCTTTTCCTT TATTACATCA TTCAGTGTCT 
    TGTCTAAACA ACGATCTTTA TGTTGTAGGT TCCATACCAG AGTCATTTGG 
    GTCGTTTCCA GGAACAGTCC CTGACCTTCG CCTATCACAT AACCAGCTCT 
    CCGGTCCAAT ACCCAAATCA TTAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2132372 [Map]; Strand: w
      • AT5G06865.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G06865.2 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G06860.1 - [+] show detail - polygalacturonase inhibiting protein 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-1009-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATGGTGTTGG TTTTGAATTT TGATGGAAAG TGTTAGTGAT ACATATACAT 
    ACTATATAGT GAGTGATATA GACTTAGAGA GACGGATTCG ATTTGATCTC 
    TGTTTCCACA TGGACCGTAA TAATAGTCAA TACATATCAT ATAGTCAAGA 
    TGTCGGCGTT GAATATGTTT GGGTAATGCA ATTACGCGTT GTATATAATT 
    AGGCTATAAC CGGTGCAAGT TATATCTCCT TGAAGCATTT GGAAATGTAT 
    ACTGAGGCAA TGTCTTCACC ATCTAATACA ACTTCTCAAA AGTTCATCCA 
    AATTTAAGTA ACCCAATTGA TCTATCCAAC AAACATAAGA TTTGAGAGAA 
    AGTTTAGATT TTGGTTCATA TTTATAAGAA AATATCGAAC AAAGTTTATG 
    GTCATCTTCA AATCGATCCG ACCGTTGGAA GAGATTTATC ACAAACGGCT 
    CTATTGAGAT AAGTGATTTC TGTTTTTCTA TGAACAAATA AATAAAATAA 
    GTTACCGAAG AAGAGCCAAA GTGTGGGCTT AATTCATCTT TCAGATCTCA 
    ATGAACGTGA ATGAGGCCCA ATTAGTTTAT AATGGGCACT ATGAAAGCCA 
    CTAGACAAGT CTTATGTTCA CAAATGATGA TCAACTGTAT CTGATCCACA 
    ATGTAAAATG TCTAATGTTC ACGCCAAGTC TAAATGCTTT GGTTTCGTTA 
    GACATN

AT5G06860.1

Model type
Protein coding
Short Description
polygalacturonase inhibiting protein 1
Curator Summary
Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.
Computational Description
polygalacturonase inhibiting protein 1 (PGIP1); FUNCTIONS IN: polygalacturonase inhibitor activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: polygalacturonase inhibiting protein 2 (TAIR:AT5G06870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06865.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G06860
Link
InterPro Scan - TAIR

AT5G06865.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G06860
Link
InterPro Scan - TAIR