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52-1020-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8141306 [Map]; Strand: w
      • AT1G22990.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 1104; Region: intergenic
      • AT1G23000.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -2098; Region: intergenic
    Flanking Genome Sequence: 52-1020-1 - 5-prime edge 
    AGTAGATATG TCGACGATGA TGTCTTTGGA TANGATAAGA TATTTGTTAG 
    ACAATACATA TATAATGGAA ATTAAATAAT TCAATGTGCA ATTGCTTATC 
    TTTGTATGTG TTCATTTTTT CAAAACAATT TTGGAGTATA GCATGGTTTG 
    GCGACAACCA GTAAGGGGAC AAGTTTTCTT GTTAATAAAT TTTATTAATT 
    CTGTTCCTTA TAATATTACG TGGTTGGTTA ATCAAATGAT ACGTNCGTTG 
    AACTTTCAAT CTAGACTAAT AGAAGACTTC CCGAGTTGAC CGAAATAAAT 
    AACACCTGCT TCTGTGCTTC TCCACTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28658899 [Map]; Strand: c
      • AT1G76400.1 - [+] show detail - Ribophorin I
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 52-1020-1 - 3-prime edge 
    GGTCTGTTTG CCNTNACTTC TCTTGAAGTT CTTTCTCTTT CACANCTAGC 
    TCCTCGACCT GCATTANTGG AATGATTTTG ACAAAAGTGA CGGTTAAGTA 
    GAGCTGAGAC TAATCAGAGG TTGAGGGAGA AATTTANAAC CTTTGGAGAT 
    ATGTGANANG CTGATGGGAA NAGACTGTAA NAAACCCAGC NACGGGNNTC 
    AGTTCTTTNN AAAGATC

AT1G22990.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23000.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G06130.1); Has 2286 Blast hits to 2008 proteins in 133 species: Archae - 0; Bacteria - 60; Metazoa - 111; Fungi - 41; Plants - 1285; Viruses - 0; Other Eukaryotes - 789 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76400.1

Model type
Protein coding
Short Description
Ribophorin I
Computational Description
Ribophorin I; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: Ribophorin I (TAIR:AT2G01720.1); Has 398 Blast hits to 398 proteins in 180 species: Archae - 2; Bacteria - 2; Metazoa - 149; Fungi - 127; Plants - 63; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Link
InterPro Scan - TAIR