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52-1071-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13468298 [Map]; Strand: c
      • AT5G35205.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-1071-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGGC TTTTGACTCA GTTCAATGGG GGTTTCTTCT 
    TAACACGCTG CGAGCTCTAG ACATTCCTGA ACAATACATT AAGTGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13468358 [Map]; Strand: c
      • AT5G35205.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-1071-1 - 3-prime edge 
    GAGATATCTA TTTTCATTGC GCACCGAGGG GAGATCGATT CTTTGTGGTA 
    GTCTTTGATT ACTTCTGTGG CAAGGAGTAA ATTTTCCATT AGCAATCTAT 
    CCTTGATGAA TGCTGATTGA TTTGGTGTAA TGAATTTTGG CAAAATGATC 
    TTGAGCCTAT TTGCCAGAAT CTTCGATATA ACCTTGTAAA GAACATTGCA 
    GCAGGAGATT GGTCTGTAAT CCTTCATATA AATGGCTTTT TTTTCTTCGG 
    TATCAAGGCT AAGATAGTTA AGTTAACTCC TTTCGGTAAA AATCCTGTCT 
    TAAAGAAAGA CTGGATAGCT ACCACGAAAT CACGTCCAAC GATTGACCAA 
    GTTTCTTTGA AGAACTCACA AGTAAACCCA TTCGGGCCTG GAGATTTGTT 
    GGTAGGCATT GTGAAAAGCA CTTTTTTATC TCATCTTCCG ATACCTCATG 
    CGTAAGCATT ATCGTATCCT CCTTAGCACA TTTGAATT

AT5G35205.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-36 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR