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52-1080-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22104801 [Map]; Strand: w
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-1080-1 - 5-prime edge 
    CTGGATGTGA CCCCAGCTTG GTGTGGCGTA AGTGGCCTTG AGTTTCTCCC 
    AGATCTCTGC AGCCGTGTTG GATCTTGACA GGAGAGGTTG AATGGTGGTC 
    GTGATTGTGC CAAGGATAGC ACTGTAAATC AGTTTGTCTT GGCGCTTCTA 
    AAATTTGTAG GCGGGATTGG CAACAGGAAC AGCGGCAGGC AGTGGTGATC 
    ATTTCAGATG GTGCGGTGAC GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22104685 [Map]; Strand: w
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-1080-1 - 3-prime edge 
    ACATCCAGCA AGTGCGTCAA CACATCAAAC AATGGAACAA AGGTACCAAA 
    ACAATCACTG AATACTTTCA GGGTCACACT ACTCGCTTCG ATGAACTCGC 
    TCTTCTTGGA AAGCCACTTG AACATGAAGA ACAGATTGAG TTCATCCTTG 
    GAGGTCTCTC AGAAGATTAC AAGTCTGTGG TTGACCAAAC AGAGAATCGT 
    GACAAACCTC CAACTCTCAC GGAGCTTCTT TAGAAACTCC TTAACCGTGA 
    AGCCAAACTC ATGTGTGCTG CTGCAGCAAC GCCATCACTT CCGGTCACTG 
    CTCACGCTGC AAATTACAAA GGGAACTCCA ACAACAATCA ATACAACAAC 
    AACCGCAACA ACAACAAGTC AAATGGTCGT GGCAACAACA ACTGGCAGCA 
    AAATCAAACT CAACAGCGAC AAAACCAATA CACACCAAAA CCGTATCAAG 
    GACGATGCCA AATCTGCAGC ATTCATGGGC ATAGTGCACG CCGGTGTCCT 
    CAACTTCAAG GCAGCACCTA CAACACGCAA CAGTCACTCC CAGCCTCACC 
    ATTCACGCCG TGGCAGCCAC GAGCTAATGC GGTTATGGCC TTGCCATACA 
    ACGCCAACAA TTGGTTACTC GATAGTGGCG CTACTCATCA CATCACCTCT 
    GACTTGAACA ATCTCTCTCT TCACCAACCA TACACTGGCG GTGAAGATGT 
    CACTATTGCT GACGGGTCTG GTTTG

AT1G60020.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)
Link
InterPro Scan - TAIR