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52-1093-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26439132 [Map]; Strand: c
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: -368; Region: promoter
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon25 (CDS)
    Flanking Genome Sequence: 52-1093-1 - 5-prime edge 
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCTCCCC GCTAAGAGGC GGACCCGTTG ACAAGTCGAC 
    TTTAGTAGTA GAGCTTGGTC CCATGGAGAT TCGTACATTT GTGGTTCAGT 
    TTTATCAGAA ACAACGTAGA AGAAGAAAGT TGTTTGTGGG ATGATTGCGC 
    CAATATGTTT GTACAATGTT TTAAATCATT CATTCATCAA CGGTTTGGTT 
    AGTTAGAAAG CGCGGGAGGA AGGTTCATGT ATTTTTCAAT CGACCATTAT 
    ACTGTGTTAA TGGGCCTGTT ATGGAAGTTT TGGGTATATA AGGCCCATTT 
    AAAGGAAATG ATGAGTGCGC GATTTGTCTC TCTTCTCAAA AACTTGAAGA 
    TCTGAGTAGA GTACTTCCTT CTTCTTTTTT TTTTTTTTTT TTTNGGGNCN 
    GGGGGNGGCN AAAAAANGGG GNNTNCNTTT TTTNNNNTTN NCCCCNAAAA 
    NAAAAANAAA AANAAAAAGG GGGNAAAAAN NGGGNTTNAN NNNAANGNNN 
    NNTTTTTNTT TTTTNCCCCN NGGGGNNCCT TTTTTAANNA AAAANCCCCC 
    NTNAANCCCC CCCNANGGGN AANCCCCCCC NNGGNNTCCC NGGGNCCCCN 
    CCCCTTTTNN NNCCCCNNNA AAAAAAANCC CCCCCNNNNT TTTNNNGGGG 
    GGGCCNAANC CCCNGNNNNN NTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26439147 [Map]; Strand: c
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: -383; Region: promoter
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon25 (CDS)
    Flanking Genome Sequence: 52-1093-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTAGAAGG 
    TTGTTCCGCT TCACCCTCCA CTTTCCACTT CATCTTCTCC TTCATCTTTA 
    CTTTCTCTTG ATTTGCTGAC AAACTCATTT CCGTCACTTC TTTGATCTGC 
    AAAAATAGTA TGGATTCATT CACCACCTAG CTAGCTAGTA TGTTAGAGTA 
    TCTCTCCACA TGTAGATGAG CAAGTGTGTT TCTTACCATT TTTCCGGAAA 
    ACAACTTCTT CAACTCAACT TTAGCGATTT TAGAGTAATC ATTGTCTTCT 
    CCCGCCTGTA AGCAACGCTC AACACTCAAT TACTGTCATG TATATCCCAA 
    TTCAAGAACA TCTAACTGTA CGTACCTCGT AGAGATGAGC CAGGCGAAGA 
    AGGACGTTCC CGAGATCCAA CTCCTCAAGA GTGATGAGAG CAATGTTTTG 
    AGGCAAGGTG TAGAGATGAT CCATGGCATA ACCTTTCACA GTATTTGAGG 
    CTTTCCATTT CTCCTTGTTC TCGTGTGCGA ATGCCATTAG AAGAGGTGAG 
    TATATTTCCT GTCCAGTCTC TCGTCTCCAC CGCCCACCTT CTCCTACCTT 
    ATTTATGCTT ACATAGTAAT TCCCACGAAT CTGCATTTAC ACAAGTATGT 
    ATCAAGTTTT GTCCTGGACA AAACACACAC AATTTCTCAA TTAATCATTC 
    ATACCGTCAA TCCTGCGCAG GTGTCATTCA CACACACAGT TTCTACAAGG 
    CTCTCCTCCA CTCCTNTCGA GTCAT

AT5G66140.1

Model type
Protein coding
Short Description
proteasome alpha subunit D2
Curator Summary
Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational Description
proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR