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Mutant Lines
52-1123-1

52-1123-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 23429029 [Map]; Strand: w
  - AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -165; Region: promoter
  - AT3G63450.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -165; Region: promoter
  - AT3G63450.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 52-1123-1 - 5-prime edge
```
GNNNNTNAAC CCGNGGNAAA ATCGGTTATA CGATAACGGT CGGTACGGGA 
TTTTCCCATC CTTCTTTCTC AACTACCTTA CCACCATCAT CACTCTAGTA 
CCAGTGTACC ACNTCCACTC CATACCTAAG CT
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 23428962 [Map]; Strand: w
- AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -98; Region: promoter
- AT3G63450.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -98; Region: promoter
- AT3G63450.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (5UTR)

TTTTTAGCTT TGCTAAAGTC CAAGACAAGA AACCAAACAT CTTTTTGTAC 
ACAAGACAAG ACAACAATAG CAGTGTTTCT AAGCGAGAGA GAGAGAGAGA 
CANGGTCTCA TCGAGCAAAG AGTGTGTTTC CATGGATGTG TACGAAGCAA 
CTAGGATCGN GCTCTCTAGA ATCCAGAACT TANACCCAGC TAATGCTTCC 
AAGATCATAG GTCTTCTCCT CCTTCAGGAT CACGGTGAGA AGGAGATGAT 
AAGGTTAGCT TTCGGGCCTC AGAATCTCCT TCATTCTGTC ATAGCCANGG 
CCAAAANGGA CCTCGAAGAG CGGCTTTCTT TCTTGACTCC GAGAACCGCC 
GAAGATTTTG AGTCCGATTT AGGGTTCGGA TGGGGTCACC GCAAAGAGGT 
GCTTAGGTCC AACTCTGTTC CGCCGAGACT TGCCAATCAG TTCACCGGTT 
ATCCATTCTC CCCCAANGGT GTCAACTTGC AACAGAGTGA AGCCCAANGG 
TTGGAGCTTT TCTTTTTCTT TATTTTTTTC CTTCATCTGT ATGGACGGGT 
ATTCTGAAAC TTTGGTTGGT AAAATGTGTA GCAGAGCTGC TGCTTTGATG 
ATGGGCGATG ACTNGCACAA ATTGGGAATA TGGAGGCCAG AGAGGATCGA 
CCTCTCGGCC ACGGCCTGCC CGGCGTCTAA ACAGATCTAT CTGACTTTCC 
CGGCTGACAG TAT

AT3G63450.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63450.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63450.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2).
Link: InterPro Scan - TAIR