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52-1124-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26428293 [Map]; Strand: w
      • AT5G66100.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-1124-1 - 5-prime edge 
    ANAAACTAAC AAAATCGGTT ATACGATAAC GGTCGGTACG GGATTTTCCC 
    ATCCTACTTT CATCCCAGCA CCAATGCCAA TGCAGGCTCG AGTGTTTCTG 
    CTACCTCATC TGAAAACAGT GCTGTTAATA ATAGCCAGAG GAAACCTTTT 
    AGACGGAATA ACAACACATC ATCTTCCAGT ACCAGTAGTA ACGTCTCCAA 
    TGCTGCGCCT TTAAACACCA GAGATCAGAA TCACAGCCAA AGGGGTGGTG 
    GCTCTTTTGG TTCAGGGAAT TTCCGTAATT CTCAGAGGAA TCGCAACAGC 
    AGCTCTTACC CTCGTGGGGA AGGTCTTCAC CATGGAAACA GGCGCAATTA 
    TGAGCATGGC AACCAAAGCG GCTTTTCTCA CCGTAACTAT AGTGGGAGAG 
    ACATGCACTT GCAACCGCAG AGGGGTGTTG GGATGATTAG ACCGCAGATG 
    CTGATGGGGC CACCATCTTT TCCTGCCAGT AGTGCGCAAT ATATGGCAGC 
    GCCTCAATTA GGTTCATATG GTGGCCCCAT TATCTACCCA GGTATGGTTT 
    TGCTCATCTT ATGCTCTCTC ATACATTCCC ATTTCTAATT CATTCATTCT 
    GCTATGTTAC ATCTTCAGAT TATGCACAGC ATGTCTTTAT GCCACATCCA 
    TCTCCAGATC CGATGGGTTT AGTTGGACCC TTCCCACTTC AACCCATGTA 
    TTTTCGCAAT TTTGATGCCA TCTTGTACAA TAAGATATTG ACACAAGTAG 
    AATATTATTT CAGGTAATCG TTTCAGTTTA TTTGGNTGNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26428283 [Map]; Strand: w
      • AT5G66100.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-1124-1 - 3-prime edge 
    TTAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    GGTTGGAAGT AGCCTGCAAT ATATATGGAT GGATAATGAG CAAAAGCGGA 
    TATATGTATC TACTATAGGC AATCAAACAA GCATATTGAC GACTAGACTA 
    AATTATCCTC TTTGGATTCG AAACATGCAA AAGAAGGAGC NTTGAGAAAT 
    GAAACTTGAA ACCACAAGCC TATAATAGGT AGATACNTGG TGAATCCCTA 
    ATATTCTGTA ATGACATAAT CGGAGCGCAA AAAGAAACGA CCTGGGGAGG 
    CGGTATTGAT GACGATGATC CATCAGGAAA AGGTTTGGAA GCATCCAAAG 
    AGGGAGACTT GATGGAAGAA GAGCGAGCAG AAAGAGAGAG AGCAGGCCAG 
    GATTCGGCGG CGCCCATGAC AGGGCCGACA TCGGAGGAGC TATTAGAAGA 
    AGGCATGTTC CAGACAGGAG GAGGCTTCTT ATCAGCATTG TCGTAGTCGG 
    AAGAGTTATT TCCGGTGGGC GGGGAGACGG AAGGCGCTGA GAAGGGATCG 
    TCCTGGGAGA GGGAAAGAGT CGGATGATCA TGGGAATCAG AAGGTAACAA 
    CCAGGGAGAG GAATCGCCGT GACGTGATCG CGAGATAGAN GGAATCAATG 
    GAGAAGCGAG ATGCAGAATT AGCGGCACTA CTCGCCGTCG TAGCCATCAT 
    GTACAGAGGA AGAGAGAGAG AGAGAGGATC ANAGAAGCTG GGGATTATTA 
    TACTCTGAAC CCAGGAAAAG AATTGGAGAA NAANAAAAAG GAT

AT5G66100.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Computational Description
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR