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52-1138-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1421135 [Map]; Strand: w
      • AT2G04180.1 - [+] show detail - transposable element gene
        Distance: -903; Region: promoter
    Flanking Genome Sequence: 52-1138-1 - 5-prime edge 
    AGTAGAAGAT TACCAGACCT GAGCTTCAAG GTTTTCATGA GCATAAGGAG 
    TTTATCACTG AAATTGATAG ATTTCACAAG AGAGAACTCG GTGAACAAAG 
    GAGACGGAGA TTGGAAGGTG AGAAAGCTGT GGTAATCACC GTACCTTGGT 
    GACGGGATCA TAATGCCGCA CTTTCTCAAC CTTTGTAAAT GGCTTCGATA 
    AAGGGATCTA GAAAAAAGAG TAGAATCCCT AGGTGACTCT AATAACCAGG 
    TTCTCAAAGA AGGCTTGTAC AAGCAGAGCA CCGATGATTG ATTATGGATT 
    AATTGACATC TAACAATTAT TTTCAGCAAT CAAGACAACG TTGGCAGANA 
    AAGACAAGGG GAAGTTTANC TAAAACCTGG CCTATGGATA AGGAGNGGGC 
    CGTCCTTTTG ACAATNGGCC AAAAAAAATN GGCTTAATNG GGGGGGCCCA 
    TACAGGANCC TANGGNNTAN GGNTGNAAAA AAATTGGGAC TGGGGGGGGG 
    CTTTNGGNGT TNAAAAAAGG GGGAAGAATT TNNCCNGGGG NGGNNCCCNN 
    NNTTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15479382 [Map]; Strand: w
      • AT3G43572.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -149; Region: promoter
    Flanking Genome Sequence: 52-1138-1 - 3-prime edge 
    CTTCTACTTG TGTTAAACCA AAGACTAACT TTGTGTGACA TTCTTAATCT 
    CCATAGTCAA GGACATTATG CGAGAGAGAA TCCACCTGTT TTGTTGCAGT 
    TTCATACATA TCTCTTGCGA ACCCTGGTTA TTGCTTCAGC GATTTTTTTG 
    AGTTTGACTA CAGACCCTTG CTCCTTCTCA ACGTCATTAT GTCTTGTGAC 
    AATGACCAAT CTTCCACTTC CCGGATCGAT CGTGGTTGTG TCTCCGATTT 
    ACCTTCTTCT CGCATGTGGC ATTGTGTTCT ACAACTCTTG TCTCCGAGCT 
    AGCATGGTTT TATCATCGGA CTATTGTACT TCTATCTTTA TTGTTTTTAT 
    CTTTGTTGTA CTAAACTCTG AGAATGATAT TCTCCTAAGC CTTGTATTAA 
    GTTTGGGTGA TTAAATGAAA ACAAAGTTTA TTGACAAAAA AAAAAAACAN 
    TTCCANCTNA AAATTTTNAT AAATAATNCN AATTTTTNNT TTTTTTGGNA 
    GNNTNCCTTN AGGNCCNNTC CCNTTTNNAA AAACCTTNGN NCNCAAAANT 
    NGGGTNGNAT AAATNAATTN NTCCTTCCTC AAAATTACCA NCNTTGGGGC 
    NTNNGCCTAA AACTCATCAA ATCCNTTTAA ATTAAAACCC CANGTCCTGA 
    AGGTAACCAA NTTNCTTACC ACCAATTCCT TAAAAAAAAN ATGAATT

AT2G04180.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.6e-05 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G43572.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR