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52-1142-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1738658 [Map]; Strand: w
      • AT3G05830.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon5 (3UTR)
      • AT3G05830.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon5 (3UTR)
      • AT3G05835.1 - [+] show detail - pre-tRNA
        Distance: -133; Region: promoter
    Flanking Genome Sequence: 52-1142-1 - 5-prime edge 
    AAACTAACAA AATCGGTTAT ACGATAACGG TCGGTACGGG ATTTTCCCAT 
    CCTACTTTCA TATAACAGCC ATGTACTTAA CATACCATTA GTATATGAGT 
    TACTCTGTTG ACATAACAGC CATGTACTTT AAATACTCTG TGACGTTATA 
    TGTTTCGTAT TCAATTCTAG TATAATTACA TAAACGGCGG ACGTATATCA 
    AACAGCTCCC GTAGCTCAGT TGGTTAGAGC GTTGGTCTTA TGAGCCGAAG 
    GTCGCGGGTT CGAGCCCCGC CGGAAGCATT TTTGTTTTGT TTTCCACAAG 
    GCCCATTTTG AAGCTCAATT TCAATTTAAC AAAGCCTAAC TCTAACATGT 
    AAACGTTTTC TTCTCGGTAG ATATGTTTCG CATTCTTATA AATGGTCGGC 
    GAAAATTTTC AAAATGTTTA CTTTTTTTCT TTCCTTGCAT CTCGACACGT 
    GGCCCCCGGT TCATCCTGTA ATCTTTTTGG AATATTCCGA TATCATATAT 
    GTGTATGCAT GTATGTATGT ATATTTGATT TCTCTAATTA CAAAACTACC 
    CCTACTTTGT CGTGTTTCTT ACTGTCCCCA CTTCACAGCT TTGTCCAAAT 
    ATTCAAAATG ACCCATCCTT CTTTAATTAT TAATATTCGG TTCTTTCTTT 
    CGATTAATTT AAGAACTAAT TATAAACTAT ATATATATAT AAATATTTGG 
    CTGGAAATGT GATTATATTT ATGGCTGTTG GGTGGNGAAC TAGATACTCA 
    TAATTTTATA GCAGACA

AT3G05830.1

Model type
Protein coding
Curator Summary
Encodes alpha-helical IF (intermediate filament)-like protein.
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1); Has 58119 Blast hits to 29878 proteins in 2086 species: Archae - 743; Bacteria - 6396; Metazoa - 31988; Fungi - 4358; Plants - 2396; Viruses - 181; Other Eukaryotes - 12057 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05830.2

Model type
Protein coding
Curator Summary
Encodes alpha-helical IF (intermediate filament)-like protein.
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1).
Link
InterPro Scan - TAIR

AT3G05835.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ile (anticodon: TAT)
Link
InterPro Scan - TAIR