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52-1200-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19609318 [Map]; Strand: w
      • AT2G47890.1 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: intron3 (CDS)
      • AT2G47890.2 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: intron2 (3UTR)
    Flanking Genome Sequence: 52-1200-1 - 5-prime edge 
    AGATCAACAG TCTTGAGAGG AACTCTGCTC TCTCTCGCTA CAAAGAAAAG 
    AAGAAGTCTC GAAGGTAAAC AAGCTAATTT TAAAAGTGAG ACACCACCAA 
    TAGGATTGGG ATTTGAATCA TGTGTTGATG AAACAGGTAC GAGAAACACA 
    TCAGGTATGA ATCACGCAAG GTTCGTGCAG AAAGCAGGAC AAGAATCAGG 
    GGACGTTTCG CCAAGGCAGC AGATCCATGA AAGATGATGA GGTTACTTTG 
    ATAATCAAAA ATCTTTTGTA TTAATCGAAT CATATAGTGT GTATGATCAG 
    ATAAGTTTTT GTATTCTAAG CTTNCANNNC NNANNGTAAN GCTNNCTGCC 
    GCTTTGGANT CAAATCTGAC TNNATGGAAT CTGTATGATT GCTTATNAGA 
    ACTNAAACCG GAACCNGNTN TTATANGCCA NNCTANNGTT GACTTGTTAG 
    AACATACAAA GCAAAAAACT NATCCGGACT TTGGCTNCNC CATGAAAGCT 
    NCCAGCCCGG CGCGNANACC NCNGNNNCNC TA

AT2G47890.1

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47890.2

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR