Home
Mutant Lines
52-1216-1

52-1216-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17901456 [Map]; Strand: c
- AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: -810; Region: promoter
- AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: -817; Region: promoter
- AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: -817; Region: promoter

CCCCTAATGC CTTCAGCTAC GGTGTGTTGG TTCAGGGATT GTATAATTGC 
AACATGCTTG ACGATGCTGT TGCTTTCTGT AGTGAGATGC TTGAGTCTGG 
TCACTCTCCT AACGTCCCCA CTTTCGTTGA ATTGGTTGAT GCCTTGTGCA 
GAGTAAAGGG GGTTGAACAA GCCCAGTCCG CTATTGATAC CTTAAACCAA 
AAAGGATTTG CCGTTAATGT TAAGGCTGTC AAGGAGTTCA TGGATAAAAG 
GGCTCCATTT CCGTCTTTGG CTTGGGAAGC CATCTTCAAG AAGAAACCAA 
CCGAGAAACC CTTCTGATTT ACTTACGCAG TGCTGTTAAG TATGCCGTCT 
CAGTAAGATG TTTTCTTGAC TTGTAATAAC AACCTTGAAA GTGAAAATCA 
ATATGAGTCT TCCTTTTTCT GCTTGGAGTC AGGTATCAAG TTTTTTTTTT 
TTCCNNNNGC CNTTAAAAAA GGGNAATTGG AAAATNAANC CCCTNNTTTN 
NANCCTTTNA AANTTGNANG CNAGTTCAAN NAANANCNTT NGNTTGGNGG 
GTTANGGGGN NAAAATTTGC NNGNNCCTTN NNANNNNTTN CCAANGNNNT 
TTNGGACNNN TTNTTNGAAA TGGGGCCCCC TTTTTNAACN AATTTNAAAA 
ATNNTTTTTT TGGTTTNCNN NNCCNGGGNT TAAANTNCTT TTTNCNCAAA 
NGGCCNNGGG G

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17901525 [Map]; Strand: c
  - AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -741; Region: promoter
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -748; Region: promoter
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: -748; Region: promoter
Flanking Genome Sequence: 52-1216-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAA 
TTAGGCAATC CCATTGTTCT GCATTTTCCT GAAAATCCTC TTAGCGTCTT 
CAATTTTATG AGCCTTGCAA AAGGCCTCAA CGACAGCAGT GTAGATAACG 
ACCTCAGGGA TTGTACCCTT GTCACGCATC AATCCGAAAA GCT
```

AT4G38150.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38150.2

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR