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52-1231-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17559610 [Map]; Strand: c
      • AT4G37310.1 - [+] show detail - cytochrome P450, family 81, subfamily H, polypeptide 1
        Distance: -667; Region: promoter
      • AT4G37320.1 - [+] show detail - cytochrome P450, family 81, subfamily D, polypeptide 5
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 52-1231-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTG ATCTATCCAA TGTTGGTTTC TTGAAATTTA 
    GAATTGGTTT GGTGACTTGG TCATGTAGTA TATGGCCTAC TACTCTTAAA 
    AGTACTGGGC ATGTGTTGGG CCTCGTCAAA CTGCTGTCTT TCTCTGCATT 
    TTAAATTAAA TACCCATTAA CAAATCGGTA TATATGTTCT TTAGTTCTCC 
    ACTGTCTGAA CTAGTAATTC ACCATAAGCT AAAAGTTTTT TATTTATTTT 
    TTGTTGATAA AGAACCGTCG TGAAAAACGA AAAGTTTGGA TTTCATGTTA 
    CTGTTGGTAC CGAATCTGCC ACGTTTTGAT GATTATAGTT GTAGAAAATG 
    TCAACCAAGC AATATTATTG TAAAGACAAT AATGGATGGA AATCTAAGAA 
    TTTCGATTGG ATTTTTATCT TATCGAGAAC TTTCAACAAA ACCTTTTGGA 
    TTGATCAATT GAAAGAGACA TAAGTGGTTA TATATAAACT TGTTCACGAC 
    ACTCCAATGT GATATGATTT TTTTGTTTGT TTGTCAAATT CATTGGTTAC 
    TTGTCTTATA GGAATTTTCC TTATTCTACA AAAACAAAAG AAAGAAAAGA 
    AAAGAAAATT GGTGCTTGTT TTTCCAAATT AGTATGCTAA TTTTATCACT 
    ATTGTATGCA CTATTTTGTT ATTTGACTTT GTAAATGCAT GAATTAATGA 
    GTGTTTAAAA ATCAGTATCT TATACAAATA T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17834246 [Map]; Strand: c
      • AT4G37930.1 - [+] show detail - serine transhydroxymethyltransferase 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-1231-1 - 3-prime edge 
    CTTTAAAACG GTNGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CCATTGTCTA GCTTTCTCAT GCTCAATAAT GTCAGCAATC TCAGGATCAA 
    CCTCCTCTAA AGGTGCGTTA AGCTGTTTTG GCCACTGAAA CGAACGTTTA 
    CAAAGACATA AGTTTCATTA GATTCAGTCA CACCAAAAAT AGAACTCCAT 
    ACATCAATTT GAAACAGACA TAGAACTTCA ACAATCAAAA CCATTGCTTC 
    AACCACAAGG AAAACTATAA ACAAACAAGA GATACAAAAA GGCGCTTAAA 
    CTCACAGTGA CACGAGATCT TTCCTTCTCA TCAACAGCTT CACTGGGCAA 
    AGAAGACTGC AACGGAACAA ACAGAAATCA GAAAAAAAAA AAAAAAAATT 
    NGAANTTTNC CNNNCCNNTT NNAAAATTGG GNAAAAAANG GNAAAAANTT 
    TGGGGNNNNN CCCNNNNANN ANNANGGGGN TCAAANAAAN NGANAAAGGG 
    GTTTNNAANT TNAAAAAAAA ANCCTTNAAA AANCCNGGGC CNTCCCCTTT 
    TTTNNTNAAA CCNTTTTTTT TTTNNGGNNN GGNAANCCCT AAAANCNNTT 
    TTGAANCNTG NCCNNNNNNA AANNNNNANC AAANTTNCCA AANTGGGGTT 
    TTTTTTNTTN NAAAAAATNG GGGCCNTNNT TTTGGGGGGA CCTTTGGGGG 
    GNGGCAANAA ATTTTNAAAT TTTTCCCCCN TTTTTTTATT NAANTTTCCT 
    NNGGANTTTN NTTTTANTTT GGGGGGNTTT TT

AT4G37310.1

Model type
Protein coding
Short Description
cytochrome P450, family 81, subfamily H, polypeptide 1
Curator Summary
member of CYP81H
Computational Description
"cytochrome P450, family 81, subfamily H, polypeptide 1" (CYP81H1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily D, polypeptide 5 (TAIR:AT4G37320.1); Has 33392 Blast hits to 33202 proteins in 1712 species: Archae - 63; Bacteria - 4035; Metazoa - 11608; Fungi - 7041; Plants - 9430; Viruses - 3; Other Eukaryotes - 1212 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37320.1

Model type
Protein coding
Short Description
cytochrome P450, family 81, subfamily D, polypeptide 5
Curator Summary
member of CYP81D
Computational Description
"cytochrome P450, family 81, subfamily D, polypeptide 5" (CYP81D5); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily D, polypeptide 4 (TAIR:AT4G37330.1); Has 34217 Blast hits to 34042 proteins in 1758 species: Archae - 61; Bacteria - 4626; Metazoa - 11716; Fungi - 7014; Plants - 9489; Viruses - 3; Other Eukaryotes - 1308 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37930.1

Model type
Protein coding
Short Description
serine transhydroxymethyltransferase 1
Curator Summary
Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.
Computational Description
serine transhydroxymethyltransferase 1 (SHM1); FUNCTIONS IN: poly(U) RNA binding, glycine hydroxymethyltransferase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 2 (TAIR:AT5G26780.1); Has 11621 Blast hits to 11596 proteins in 2825 species: Archae - 258; Bacteria - 6371; Metazoa - 337; Fungi - 287; Plants - 346; Viruses - 6; Other Eukaryotes - 4016 (source: NCBI BLink).
Link
InterPro Scan - TAIR