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52-1260-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26434577 [Map]; Strand: c
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -799; Region: promoter
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-1260-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTTACCTTG AAGCCGCTTA AAGCTTCATC GAAATCTTCG 
    AAAGACAATC TAATCTGCGA GACATATAAA AAGCGAAACT CGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26434643 [Map]; Strand: c
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -865; Region: promoter
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-1260-1 - 3-prime edge 
    CCGTACGCGC CAACTTTGCC TGGATCCTAC TCCACAATTT TCACACTTTT 
    ATTGATGTTC CGCTATGATG CTTCCTCTTA CGGTTTTTGG AGCTTATAAT 
    GTCTGTCATT TCATTGCTCT GTGGTCTCTT GTTTAGGTTA TGAAAGGAGC 
    AAGAATACCG ATTTGTGGGT TGACAAATAC AGGCCTCGCA CCTTGGAAGA 
    GCTTGCTGTT CACAAGAAGA AGGTTGCTTT GTTCTTTCTT TTCCTTTTAG 
    CTCTGCTTTC TCCTTGGTTC ACCAACTCAT CTCCTTTCTT GTTTTTGTTA 
    TCTTTAGGTT GACGAAGTCA AATTGTGGTT TCAGGAAAGT TTGGATTTCT 
    TAAAGGTAAT GTTTCGTTTA TCTTTGAAAT TGATTTATGA TTTCAGAGCT 
    CGTGATGCTT AATGGCAGTA TTCACTTTTT TGCCTTTCTG TTTCAGCAGA 
    ATGGTTTAAG GAATAACGTT CTACTAGTCA CAGGACAAGC TGGAGTCGGA 
    AAATCTGCTA CCATCCATTT GATTACGTCT ATCCTTGGAG TCACAGTGCA 
    TGAGTGGAAC GCTCCTATTC CTACCATCTG GCAAGAACAT GTGCACAACA 
    CTAGTTCANG TACTTGAAGG AATTATAGNT GNTAGNTACT CANNNTTGGC 
    ACTGCTNTTA CNNACCANAN GATGGNNGNN GNNCTANNCC NGNNATAANN 
    NACNGGATNT NATTANTNTT NTANGACTGN ANNNCNCN

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR