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52-1263-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13468367 [Map]; Strand: c
      • AT5G35205.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-1263-1 - 5-prime edge 
    AAANNNNAAA NNNAANNNAN NAANAAAAAA AANAAAAANN NNNNNNANAN 
    GNNNNNTTCT NCNGGNTTTC GAACCGGGGT CAAANCGGTT ATACGATAAC 
    GGNACGGTAC GGGCATTTTC CCATCCTACT TTCATCNGNT NTTGACTCAG 
    TTCAATGGGG GTTTCTTCTT AACACGCTGC NAGCTCTAGC ACATTCCTGA 
    ACAATACATT AAGTGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6654562 [Map]; Strand: c
      • AT1G19250.1 - [+] show detail - flavin-dependent monooxygenase 1
        Distance: -1484; Region: intergenic
      • AT1G19260.1 - [+] show detail - TTF-type zinc finger protein with HAT dimerisation domain
        Distance: 2698; Region: intergenic
    Flanking Genome Sequence: 52-1263-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTTACTATCT CTATTTATTT ATTTTATTTT TTGTCTCTAG TTTACTTTTG 
    ACTAAATCTT TATCCCTAAA AGCGAATTAA AATAATAATC GAGTACGTGT 
    CCATGCAAGT GTTGAATTTC AAAACAATGG AAAAAAGTCT AGGTAGCCTT 
    ATCACNTTAT ATTTGACTAT CACCCAAAAC TATGAATTGT ATAAGCACAC 
    ATTGACGAAG GATTTTTCCG ACTAAATTTA TGTTATACAT TTTTATTTTT 
    ATCAAATTTG TGTCAAATTG TATTATTAGT TATACTATAT ATATTAAAAA 
    GATAGAAAAA GAGATATAAA ACAGTAAGAT TACGAAATTG TTAAAGACAA 
    CATAGTAATA CATAAAGCGG TAAGGATTTT GTACCACCTT ACTTTTAGAA 
    ATCATAAGTT TATATCTGCG ATACTATAAT GTAAGTTCAA TTAAGAAGGA 
    AATACATGAT GGTAATATAA TAATAATGTG GATTATCTAA GAAAATATAG 
    CTATT

AT1G19250.1

Model type
Protein coding
Short Description
flavin-dependent monooxygenase 1
Curator Summary
FMO1 is required for full expression of TIR-NB-LRR
Computational Description
flavin-dependent monooxygenase 1 (FMO1); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: stem, leaf whorl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Dimethylaniline monooxygenase, N-oxide-forming (InterPro:IPR012143), Flavin-containing amine oxidase (InterPro:IPR001613), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G45180.1); Has 7639 Blast hits to 7432 proteins in 837 species: Archae - 6; Bacteria - 3396; Metazoa - 753; Fungi - 1311; Plants - 833; Viruses - 0; Other Eukaryotes - 1340 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19260.1

Model type
Protein coding
Short Description
TTF-type zinc finger protein with HAT dimerisation domain
Computational Description
TTF-type zinc finger protein with HAT dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09660.1); Has 1044 Blast hits to 976 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 1; Plants - 428; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35205.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-36 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR