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52-1268-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7969620 [Map]; Strand: c
      • AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
        Distance: -192; Region: promoter
    Flanking Genome Sequence: 52-1268-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TTAGGATCAA AACACCAGTT CTATAGTATT 
    TATAGTTAAA ACCACAATAT TTTTATTTTC CTTTTTTTTC TCTAATTATG 
    GTGCTTAATA CATTGTACCA TACGACAAAT GGTATATAAT ATCAATTGAC 
    TCCTTTTATG TTAGGAAAAT AATATATAGA AATAAATCTT CTTTTCTTGG 
    CAGCACATAG AAATAAATCT AAATATAAAG TTTTCCATTT TATAGGATTA 
    AATAAAATTG TGCTGGTGTC AACTGTCAAG CAACAATTTT GCAATTCCAA 
    CACATCTAAA GTCATGAGGC CAAATTTAAC TTTTAATAAA TTGCCCTATA 
    TATCTTTAAG AAAATAATAT TAAATAACAT CTTAAGATTC CATTATATTT 
    TGATGTAGAA TATTCTTTCA CACGCCTAGT GAGACAAGAA TCATAAGAAT 
    ATTTTTTAAT ACATTGGTCT ATATATTTAA CTTTTATGTT AATGAAATTT 
    TTCTTAGAGG CAAAATTTAA GTTTTAATAC ATTGACCTAT ATATCTTCAA 
    ACAATTAAAT TTTGGGTCTT AATGATTTTA AATAACTAAA TATGTGGTCT 
    CTACATTTTT TTAAATAATT GAATAAAAAT AAAATACATT TTTCTTAAAA 
    CGTGGAAACC ACATATTTAA TTATTAGAAA TTACTTAGTA AAACTAAATA 
    TATACATCTT AATTATACTT TTTTCTTAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7969627 [Map]; Strand: c
      • AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
        Distance: -185; Region: promoter
    Flanking Genome Sequence: 52-1268-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATCTTCTGTT CATAGTTCTT GAAATAATCA AAGGTTGGGG TTCTTACTAG 
    TCTATCAATA CTAGTTTGTG GGGTTCATAA AAGAAAGTTT ACGATTTCAA 
    ATCAATTGTT TTGGTCTTTT TTTTTCTTTG GTCGGAGAGT ATTTTGGTTG 
    ATCTAAATTG TTTGAAGTAA TAGATTTTTT TGAGAAAATG AATTTGGGAC 
    AGGAAATTAG TGTTGGATCG TCTTGGAGCA AGGATGATGA TATTGCTTTC 
    GAGAAAGCCC TTGCAATTTA TAACGATAAA ACAGAGATTC GTTGGAAAAA 
    AATTGCTACA GTTGTTCCGG GAAAAACTTT AGAACAAGTT ATAGAGCATT 
    ACAACATTTT AGCTCGTGAT GTTATGTTGA TTGAATCTGG ATGTGTACGT 
    CTTCCANATT ATGATGATTT TTTAGAANAA CCAAATCACA ATGCTTTTGG 
    TAAAGAAAGA AGCATATTGG AAGGTGGCAA CGATCGCAAA TATGAGTCTA 
    AACACAAAGG TAAATCAAAA CTAAAGCAAA AACGACGAAG GGGTGTTCCT 
    TGGAAGCCTT TTGAACACAG GTTCCTACTA AACTCACTTG TTTTTAAAGA 
    ATATTTTATA TGTGGATGTT TTTTTTATAG TAAACTTATA GGTCACTGAA 
    TGTGAAATTC CGAATATGTN GATTTGTATA TCATGGGGNC ACTAGTAACA 
    TTATTGCATT TNCAGTTNGA TAATATAAT

AT5G23650.1

Model type
Protein coding
Short Description
Homeodomain-like transcriptional regulator
Computational Description
Homeodomain-like transcriptional regulator; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G08520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR