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52-1275-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8184333 [Map]; Strand: c
      • AT5G24160.1 - [+] show detail - squalene monoxygenase 6
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 52-1275-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAC AGGTACGCAT TGAAAAAGAA ACTAAACATA 
    TAAATACATA TAACTAATTT GTTGTTACTT GTGCAAGTCA TACCTAGATA 
    CATTCTAACA TGTGCAAGAG TTCCATAACT CCATGCACAA TATATATTCA 
    ATTAACATCT CTTACACTTA TTTTTCAGGT ACCTCCAAAA CTCCGCAAAA 
    TATTTTTGAA AGGTATAGAT GAGGGAGCAC ACATAAAAGT GGTGCCGGCA 
    AAGCGCATGA CATCTACTTT AAGCAAGAAG AAAGGTGTGA TTGTATTGGG 
    AGATGCATTC AATATGCGTC ATCCAGTTGT TGCATCTGGA ATGATGGTTT 
    TACTGTCGGA CATTCTCATT CTACGCCGTC TTCTTCAGCC ATTAAGCAAC 
    CTCGGCGATG CAAACAAAGT CTCAGAAGTT ATCAATTCCT TTTATGATAT 
    CCGCAAGGTG AGCATATGTA CATATTAATC TTAAACATGA AAATTTGATT 
    TGTTTTGAAA CTAATACATG ATTGTTTTAT GGTGTCGTAA GCCAATGTCN 
    GCGACGGTTA ACACATTGGG AAATGCATTT TCTCAAGTAC TAATTGGATC 
    AACGGATGAA GCAAAAGAGG CAATGAGACA GGGTGTCTAT GATTACCTTT 
    GTAGTGGCNG GGTTTCGTAC GTCAGGGATG ATGGCTCTGC TCGGCGGCAT 
    GAATCCTCGT CCTCTCTCTC TCGTCTATCA TCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8184357 [Map]; Strand: c
      • AT5G24160.1 - [+] show detail - squalene monoxygenase 6
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 52-1275-1 - 3-prime edge 
    AGAGGNTTTT ACCGACCGTT ACCGACCGTT TTCATCCTNT AGTATTCTTC 
    ATGAAAGTAG ACATTTCACC ATTTGCAATA GAAGGAAAAT TTTCGGGGAG 
    AACCTNAAAA CCACAACGAA CGTCAGTGCT GCTTATTTGG TATACCATGG 
    TGAAAGATGG TTTAGACAAT ATCAAGTGTA GCTTTTCGGG TTCTTCAAGC 
    CGACAATTCT TTGAGATGTA ACCAACTATG TACGACATAA TCTCAGCCTG 
    TATCAAGTTA TAGCGCATTA ATGCTTATTA ACTAACTGAA TAAATCAGAG 
    TGAATAACAC AAGTGCAATG CCATTAGCAG TTTATATGAA AAGATTGTAG 
    NATTTTCGTT TAAAGAAGCA TCCTTACATT GTTGTCATCA TTAAGAGACC 
    GACGAAGGTT TGAGTAGCAA CCGTCGCATA CCACAGTGAG AGGTGCCAAG 
    GCTGTTGATT CTTNGCCTTC TTTATTCTTG TATGTCACTC CTTTGACCAC 
    TCCTTTTTCT TCTANTAAAG ACTTCACCNG TTCCTTNTTC CAGGCGCACA 
    CTACGANTTT AACGATTAGT AAACAAAATC CTTGCTATTA TCAAGTTTAN 
    TAATATTTTC TAGTATAAAA AATNGGGATG NTCAATAAGT NTTTTCCGGA 
    TTTNCCAAAA TTTAATTCCN ACGCTAATTG NNTTNTTCNG AGAAGGGNCT 
    NCGCATCTAT NTNANNTTAT TNNNTTGAAN GCNTTCATCC TGATNTCANA 
    NTGCNTANAN TTAAAGCCCT AAAAAGGNCC TNCA

AT5G24160.1

Model type
Protein coding
Short Description
squalene monoxygenase 6
Computational Description
squalene monoxygenase 6 (SQE6); FUNCTIONS IN: squalene monooxygenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G24150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR