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52-1277-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13072141 [Map]; Strand: w
      • AT4G25620.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -2462; Region: intergenic
      • AT4G25630.1 - [+] show detail - fibrillarin 2
        Distance: -1992; Region: intergenic
    Flanking Genome Sequence: 52-1277-1 - 5-prime edge
    TCCTATCACA TATTGTCATT GCAAAGTGTG TTAGCTCATT ATGCACATGG 
    TGGTTTAGCT CTTTATGTAG ATTGTTAGGA TCTGGTTTGA AAAAATAAAT
    AATAGTTACT TAACATTCAT ACCCAAAAAA ATAATAAAGA ATAGTTGATA
    ATATTTCATG AAAATCGATT TGTTTTGGTG GACATACATC GTCGTCTCTA
    CTCTATTGTC TCGATCGCAA GTAATATGAC AAATAAAGCA GCAGCCCTAG
    CAATAAAACA TGTGACTACT AAAATAGGAG GATTTATCTT TACTTGACGA
    ACTATAAATT AAATATCTAC TCTTTTACCT TGACTTTGAA AATTACTTTT
    TAAGATTGCC TTTTACAATT ATGTGGAATA GCGGCACACA TTTACGTAAA
    TTTAACTTCA ATTTAAAACA ATGATTTATT CATTTTCATC ATACAAACTT
    TTCAGCACAT TTTCTCCTTT TTAATATAAT TTTATATATT ATAGATAGAG
    ATATAGATCA AACAATGTAT GACTTTAAAC TTAGATTGTA AATTCTTCTT
    ACTATGCTCG AAAATTTCAT CTACGTATAT AGATCTATTG TAAACCTAAG
    TTTAAAACGG AAATCAGTTA TTGATAGTAA TCTAGTAAGT TTAATCAACT
    ATGCGTTATA ACATAATGAA ATCATATATA CGAGCTTAGA TATCTAATTC
    AGTTAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13395865 [Map]; Strand: c
      • AT4G26540.1 - [+] show detail - Leucine-rich repeat receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G26542.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-1277-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    AGTGTAAACC GCCATGAGAA CAAGTACGGC AGTGACGACG ACGAGAATTA
    AAATAGTCAA TCTAACGACG GAGCTGTTCC TGGTCGTCGG GTCGGGTCGG
    GTCGAGATTG CGTTCGAGAT GTAAAGCCCT CTGTTTGAGG CGAGATCAGA
    AAGTGGAAGT CGCCGGAAAA AGGGCGTGTT GGGTAAATCG CCGGAGAAAT
    CGTTGTAGGA GATGTTGAGA GAGACGAGGT TTTGCAAATC CGTTAAAACG
    TTTAAGTTTC CGGTGAGTTG GTTGTGAGAT ACGTCGAGCA CTCCAAGGTT
    TTTCAAGTCG GAGAATCTAG ACGGGATTTC TCCGACGAAC CTATTGCAGC
    TGAGATTAAG AGATATCGCC AGAGACGGGA TTTGACCCAA TTCGTCAGGG
    ATTTCACCAG AAAAGTCATT TTCGCCGAGA TTGAGAAGCT GTAGACTCCG
    ACAAGTGGAG ATTTCTCTAG GGATTTCGCC GGATAATCTG TTCTTGGCGA
    GATTGAGCTT TGTAAGCTCT GTCAACAATC CTATTCCCGG AGGCAGAGTA
    CTGGACAGAG CATTATCGGA GAAATCGATG AACTTCAAGC TCTTTGGGAG
    TGTAGTACCG AGCAATGAAC CGGAGAGACT ATTCGTGTGA AGATCGAGAA
    ACTCGAGGCT TTCACAACCA GAGATCGCCG GAGGGATTGA CCCGACGAGA
    CGGTTCTCAC TTATATCAAC AAAGTTG

AT4G25620.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 940 Blast hits to 722 proteins in 169 species: Archae - 0; Bacteria - 80; Metazoa - 158; Fungi - 130; Plants - 239; Viruses - 59; Other Eukaryotes - 274 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25630.1

Model type
Protein coding
Short Description
fibrillarin 2
Curator Summary
encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.
Computational Description
fibrillarin 2 (FIB2); FUNCTIONS IN: snoRNA binding; INVOLVED IN: response to salt stress, RNA methylation, rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 1 (TAIR:AT5G52470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26540.1

Model type
Protein coding
Short Description
Leucine-rich repeat receptor-like protein kinase family protein
Computational Description
Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G56040.2); Has 218237 Blast hits to 120439 proteins in 3896 species: Archae - 151; Bacteria - 20470; Metazoa - 64079; Fungi - 7848; Plants - 101542; Viruses - 308; Other Eukaryotes - 23839 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26542.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G26540
Link
InterPro Scan - TAIR