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52-1290-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2761634 [Map]; Strand: c
      • AT3G09040.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-1290-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTAGGGAGA TGGGGATATC TTCAAGAAGC TGATGACTTC 
    ATAGAAGCAC AAAACCTGAA ACCAGATGCA AGACTTTGGT CATCTCTTCT 
    TGGTGCATGT AGGATTCATG GAGATGACAT TAGGGGAGAA ATTTCTGCCG 
    AGAAGCTCAT TGAATTAGAA CCACAAAACT CGTCAGCTTA TGTTCTTCTT 
    TCGAACATAT ATGCCTCACA GGGATGTTGG GAAAAGGCCA ATGCTTTGAG 
    GAAAGTCATG AGAGACAGAG GAGTCAAGAA GGTACCTGGA TATAGCTGGA 
    TTGATGTGGA ACAGAGAACA CACATTTTTG CTGCAGGAGA CAAATCTCAT 
    TCTGAAATAG GAAAAATCGA GATGTTCCTC GAGGATCTTT ATGATTTGAT 
    GAAAGATGAT GCCGTTGTCA ATCCTGATAT CGTGGAACAA GGTTCTCTTG 
    ATTGTGTGTA ATAAAACAAG GAAACACTAA CGGTGAGCAG CATCTCGACC 
    ATATTTGATT TCGTACAGAG CTGAAGATCA CCAGATATGT TCACAAAATC 
    AGATACAATG GTAGGAGCTC AAATTTCATA CGAACATGCG ACTATGTTTC 
    TTTCGCCTTT GGTGATGTGG ACTAAGTTTT CATATAGCCA AGAAAACAAG 
    GCTTTATTCT CGTTCCTTGA GTACTATCAG ATCAGGTAAC TGGGTTTGTT 
    TGCAGCCAAA GCTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2761636 [Map]; Strand: c
      • AT3G09040.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-1290-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGTCTCCCAA GAAGATCAAC CATACAAGCT ACATGATCTA CACGCGCTTC 
    AATACCATAT TGACCAATCA TCATCTCAAA AATCTTTCGT CCATCTGACA 
    CTTTCCCTGC ATGGCTACAA GCTGTAAGAA CACCTAGGAA AGTGATTTCA 
    TCTGGCATGA TATGGGATTG TCTCATAGAA TCAAAGATTT TCAGGGCATC 
    TTCAGCGTAA CCATTTTTCG CATATCCATT GATCAAGGAG TTCCATGAGA 
    CAACGTTGCT TCTACGCCTC ATTTCATCGA AAACTTGTGA CGAACCTTTC 
    ATGTCCCCAC ATTTAGCATA CATGTCTATT AGGGTGTTAG AGGTCAACTC 
    GTCCAAGTCA TGGGCCAAGT GAAAAATAAG AGAATGGATA GCTCTACCTT 
    CTCTTAAAGA GGAAAGGACA GAACACACTC GAAGAACAGT GACAAATGTT 
    GCCTGGTCAG GTAGAACACC ATCATGACGC ATTTCTTTGT AAAACTTCAA 
    GGCCTCCTCA TAAAATCCAT TCTGACTGTG ACCTGACATC ATTCCCGTCC 
    AAAGAACAAT ACTCTTAGGG CTTGATAACT CTGAGAAGAG TGCACAAGCC 
    TCTGTCATTC CACGTGAATT

AT3G09040.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 73401 Blast hits to 14698 proteins in 289 species: Archae - 0; Bacteria - 19; Metazoa - 251; Fungi - 280; Plants - 71776; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink).
Link
InterPro Scan - TAIR