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53-2011-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24603036 [Map]; Strand: c
      • AT5G61140.2 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: 0; Region: exon48 (CDS)
      • AT5G61140.1 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: 0; Region: exon48 (CDS)
    Flanking Genome Sequence: 53-2011-1 - 5-prime edge 
    NGGTGGTAAC TCCATGCGTG TGATCAGACG ACCAGTGAAC GAAACTCTCT 
    TCACAGCAAA GAGCTCAGAA GTTGAAGTAT CACCAAGAAC CAACCACCAC 
    GCTTCGTCTT TCACCTATAA CACAAAATAA ACGTGTTGAA TTCAATTTNA 
    TTTTTGTTTC GAGCTCAAAC TAATCTNTGC TACTCCACTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24603153 [Map]; Strand: c
      • AT5G61140.2 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: 0; Region: intron48 (CDS)
      • AT5G61140.1 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: 0; Region: intron48 (CDS)
    Flanking Genome Sequence: 53-2011-1 - 3-prime edge 
    ACCTCCCAAT ATAACCTCTT NTCAGGTACN AACNAATTTC AACTTATTTT 
    CTCAAACTAA ATCATTCTTT CTTACACTTC TATGTATATA TTATTATTGC 
    TGAATTGGT

AT5G61140.1

Model type
Protein coding
Short Description
U5 small nuclear ribonucleoprotein helicase
Curator Summary
Encodes a predicted protein with 30% identity with MER3/RCK.
Computational Description
U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20721 Blast hits to 12373 proteins in 2023 species: Archae - 1746; Bacteria - 9151; Metazoa - 2213; Fungi - 2164; Plants - 862; Viruses - 60; Other Eukaryotes - 4525 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61140.2

Model type
Protein coding
Short Description
U5 small nuclear ribonucleoprotein helicase
Curator Summary
Encodes a predicted protein with 30% identity with MER3/RCK.
Computational Description
U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2).
Link
InterPro Scan - TAIR