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53-2018-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 416747 [Map]; Strand: w
      • AT5G02110.1 - [+] show detail - CYCLIN D7;1
        Distance: -275; Region: promoter
    Flanking Genome Sequence: 53-2018-1 - 5-prime edge 
    GAANNCNCGN ACACACTCAT AAGTATGATT TTTCTTATCG TATTATTAAA 
    AGTCATTAAG TGAACACAAA TATATCGTAA AGAAAACTAA AGAAATGAAG 
    AAAATATCTA ATTATGTTAG AGTTTCTTTC GAATTAGTTT GTTAAATATG 
    TCTAAACTAA AGTTTATAAA AGGTGGAGTT TCTAAATGAA CCGGTATATA 
    CTAAACCGAC GCATCTTCTT CTGATTGAAC CGACTTATTT TTTTAACTTT 
    TAACTGTCTT CCATAACTTC CCATTTTCTT CTCCANGANT CTCTCTCTCT 
    CTCTCTCTCG CATATATAGA TNTCNCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19590955 [Map]; Strand: c
      • AT2G47830.2 - [+] show detail - Cation efflux family protein
        Distance: 0; Region: exon12 (3UTR)
      • AT2G47830.1 - [+] show detail - Cation efflux family protein
        Distance: 0; Region: exon12 (3UTR)
    Flanking Genome Sequence: 53-2018-1 - 3-prime edge 
    TNAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATTTTG 
    AGCAGTGTAA AGAAAGCCAG AAATATCAAC AAAATATTGA CAATCAGTAT 
    GAACATAGTT AGCGCACTGT ATTTCTTTTT TTAAAAATTA TAGTTGTTGC 
    AGCCATTGCA GAGGGGTCTT CTCTTGTTAT TTCCTTCAAA GTTATTCGGA 
    GTTAAGACTA AGCTTGAATG CTGACACGAG CCACATTTGG GGCTGCCTTC 
    AGAATCTCTT TCTCTGCATG TTCAGCGGCT ATCATGACGT CCCTACAGAG 
    CAGCCAAATA CTTGTCAGAT GGTTACAAGA GAGTGGCCAA AATGGCCTAA 
    AGGTACAGAC ATGTAAGAGC TTTACTGTAT GGACATGGTT GATGGCATGG 
    CGACTACGAT TTGGAGCAAG ATCTTGCTAT GTAACAAGTG GGGTGTAATT 
    CGTTTGATCG TCAATTTCTG CACATATGCG AAAGATTCCA TTGTTCTTGA 
    AACTAATAAA CAGGAATAAC TAGAGGTTGG GTTAGGTCTG GATTATAGAA 
    AGTTGAGTAC CTCAGACAAC TGCGACGAAA AAATGTCTGA GACAGTGGCT 
    TCAACATGTT TAATCTCTTG GCAGATGTTA CTTTCCTTCG TTATACTGTC 
    ATGATCCTTG GTGCTACAAG AAAACTGTAA AAAGGCTGGA TCTGCAAGGG 
    AAAGTTTGAG ATGATAGCTA AGACCGAGAA GCAGTGAATA AGTTGATTAG 
    ACCTNCATGC AGCATGC

AT2G47830.1

Model type
Protein coding
Short Description
Cation efflux family protein
Computational Description
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT3G58060.1); Has 9484 Blast hits to 9472 proteins in 2416 species: Archae - 234; Bacteria - 7791; Metazoa - 296; Fungi - 408; Plants - 276; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47830.2

Model type
Protein coding
Short Description
Cation efflux family protein
Computational Description
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT3G58060.1); Has 9392 Blast hits to 9378 proteins in 2385 species: Archae - 234; Bacteria - 7700; Metazoa - 297; Fungi - 408; Plants - 275; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02110.1

Model type
Protein coding
Short Description
CYCLIN D7;1
Computational Description
CYCLIN D7;1 (CYCD7;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D3;2 (TAIR:AT5G67260.1); Has 2441 Blast hits to 2441 proteins in 290 species: Archae - 0; Bacteria - 0; Metazoa - 935; Fungi - 354; Plants - 916; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Link
InterPro Scan - TAIR