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53-2025-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20178896 [Map]; Strand: c
      • AT3G54500.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G54500.4 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: intron1 (5UTR)
      • AT3G54500.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: 0; Region: intron1 (5UTR)
      • AT3G54500.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-2025-1 - 5-prime edge 
    NATTTAGGAG GATGCTGCTG TAATCAAGGT TTTTCAAAGC TTGTGGCTTT 
    TTCNATTTAA TATTCNTTTA TTTATCGTTT NTTCCACTTT ATTATANGTG 
    TGTGGATTTA CGTTATCCGA NTTGTTNATC TTGTTGTTGN TNCCNGGATT 
    TTGTTCTGTT GTGGAGCNGG CGATGTNTGG AGCAATCAGG GANCTNNATT 
    TTGGGTCTAT NCNAGTCCAC TA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20178957 [Map]; Strand: c
      • AT3G54500.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G54500.4 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G54500.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G54500.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2025-1 - 3-prime edge 
    TTAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCC 
    GTCCTCCTTC GTGCTCAAAG GATATGGGAA GAGAAAGGAG TTACAGTGGA 
    AAAAAGAAAA AAGAGTTTTT TTTTGTNTGA AATGGTCACG GTNCCAAACN 
    AGTGGCTTGA NANANAACGG GTTGCCACGT CANACNANAA GGCCGTNTNT 
    AACCNTGTGG CTGANAGTAA NCNCNACTTG ATTCCNTGAC AGCTCATTTT 
    GACTTTCCCT GGCTGNGGTC TTTTGTTGAC GTTTTTTTAA TATTTTTCAT 
    GTTATATCGG ATTAGNGTTC GAGAAAAGAA NAGACCCCCA NTNGGGTAAA 
    TNTGTTTTTA AAANAGTGGA NCCAGNGTTC AACTTTTAAA TTTGGNGGGG 
    TTTGAGTTCN TANCNACCAC AATTTTTATC TTATATGTTT NAACTAATTN 
    ANCTTTCNTT GATNTCCACT TTTTCAAAAG TNTTTGCTTG GATCAGTTTA 
    TTGAAAAGGA NCTAATGCGT TNTCCTGAAC AGTTCATAAC GAAACAGNGG 
    ATNTAAATGG TTGCAATTGA TATATATTTT TTAATAAGNG TGTTTATTTT 
    TCAATTTTAA TGAAATCGTT TTCGTCCTTG ATGACTAGGT TGAAAATTTT 
    CAAACCTTGT TAATAGGCTT TTGNGCCTCN ATTGTTNTNC CGTTGGNTTA 
    TNTTGGGTTN GNCCTTNGNT TTCCNNGATT AAACNAATTG NNGGNAGGGG 
    TTNCTTTTNN TTCAAAANGA N

AT3G54500.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54500.2

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54500.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1).
Link
InterPro Scan - TAIR

AT3G54500.4

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.2).
Link
InterPro Scan - TAIR