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53-2028-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 300504 [Map]; Strand: w
      • AT4G00730.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: intron8 (CDS)
      • AT4G00730.2 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: intron7 (3UTR)
    Flanking Genome Sequence: 53-2028-1 - 5-prime edge 
    TTTACCAATC CACTCTTTTG TCCTTCATAC CACTATCAAC TCCATGGACA 
    AAAACGTCAC AATCACCTAA TCCATATTCC CCACAAAACT CGAACCAATC 
    ACACACACTT CTTAGCTAAA CCGGAACACT ATTCTATAGG CCGGTTTTAC 
    TGAACTAAGA TCTACTAACC GGTTAGAATA GCAATGTTAA ACCAGGAGTG 
    GTACGTGATA TGGAAAAACT TACATTGGAG CGGAGCAGAG AGACACCCTG 
    ATCTTGACCT TTGGTGATAT GGGCCATCTC CTGCATGGGA CCACCGTTGG 
    ATAGAATATC CCATTCGCAT CTCATCCGTT CGTTCCGCAA GAAATCATAC 
    AGACGCTGTG GTGCAGCAGG TAGCCAAACA GAAGTGGCAG CACTCAAAAC 
    AATCCCCGGA GGCTCTCCTG GATCGTCCAC ACTCTTACGG GTCATAACTC 
    GAACGTCCGG GTCAACATTT CCAACAGTGA GCTTGCTCCA ATTGTGGACC 
    GACGGCGCCG AGATTCCCGA ACAGAAGTTG AACGTCATGC GTTGAGCTAA 
    CTTCAGCATG CTTTTTCGAC CACCANGCGT TATTGCTGCT TTTGCATGTA 
    AAATGGTCAA AAGTTTTGTA ACATAATGAC AAGATTAATT ATGTTAAGCA 
    TAATGACAAG TGTGTAAGAA ACGGACATGT GNTGTCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 300430 [Map]; Strand: w
      • AT4G00730.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: intron8 (CDS)
      • AT4G00730.2 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: intron7 (3UTR)
    Flanking Genome Sequence: 53-2028-1 - 3-prime edge 
    TTAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCAAA 
    GGACAAGTTA GGAATTTGGG TGATATCAAA AGATGACACT ATAATTTCAA 
    TTTATATTTG TTTATTAGTA AGTAGAAAAC AAAAGTGTCA CAGCTTTTGT 
    AAGCGTTTCA AAAGTCAAAA TTAATAGGAC AGTTTCAACC TTTACTTAGC 
    NTTCTGTAGT TTTTGACTTT TCACCACTTC CTTTTTTTTT GTTGGGTCTA 
    TCTGAAAAGT TGTTTTGACT TGTTTTTCTT TTAACCATGA AGCGTTACTG 
    TTTGGTCANA ATGGCAATTC TCGTAAATAA ACACTTTANC TGAGGTTGTT 
    TTGGTTTTGT CAACTCTACA GGCAATGAAC GCNAATCANA GTAGTATGCT 
    AATTCTTCAG GANACATGCA TTGACGCATC TGGAGCGCTT GTAGTATACN 
    CGCCTGTCGA CATTCCCGCC ATGCATGTGG TGATGAACGG NGGTGATTCA 
    TCCTACGTGG CTCTCCTTCC GTCCGGTTTC GCTGTTCTTC CTGACGGAGG 
    CATTGACGGT GGTGGGTCAG GTGATGGTGA CCAGCGACCG GTTGGTGGNG 
    GATC

AT4G00730.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
Computational Description
ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 12660 Blast hits to 12608 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9962; Fungi - 223; Plants - 2228; Viruses - 1; Other Eukaryotes - 246 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00730.2

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
Computational Description
ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR